View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_high_10 (Length: 344)
Name: NF5139_1D_high_10
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 42484337 - 42484011
Alignment:
| Q |
7 |
atgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcacattcttccatagataagata |
106 |
Q |
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| T |
42484337 |
atgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcacattcttccatagataagata |
42484238 |
T |
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| Q |
107 |
tggtggaagatattctcaatcaaaaaggaggtggttggatgagatggtcaagagcatgacctattattatcatatattatggtccaataaaataaaattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42484237 |
tggtggaagatattctcaatcaaaaaggaggtggttggatgagatggtcaagagcatgacctattattatcatatattatggtccaataaaataaaattt |
42484138 |
T |
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| Q |
207 |
atgatatgatactatatagcaatagcaaagacagaaattgatatgatgtggtccatagtctatactagcatatagattaatataaggtaagataacgaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42484137 |
atgatatgatactatatagcaatagcaaagacagaaattgatatgatgtggtccatagtctatactagcatatagattaatatgaggtaagataacgaaa |
42484038 |
T |
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| Q |
307 |
caagtcaatatcttagttgctgttcat |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42484037 |
caagtcaatatcttagttgctgttcat |
42484011 |
T |
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