View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_high_11 (Length: 328)
Name: NF5139_1D_high_11
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 40625552 - 40625238
Alignment:
| Q |
7 |
aacactctgcttgagttgaagttaacaaacatgtcaatggatatcaatgctgaggcgcataacatcccaccaaattgtctagtggttaaaactaatcttc |
106 |
Q |
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| T |
40625552 |
aacactctgcttgagttgaagttaacaaacatgccaatggatatcaatgctgaggcgcataacatcccacccaattgtctagtggttaaaactaatcttc |
40625453 |
T |
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| Q |
107 |
agtagaatatatttccatcactgcacaacatggtgagtactcagtttcctcattttttggatgtttgctttctttctttgtcttttcagtagtttaatta |
206 |
Q |
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| T |
40625452 |
agtagaatatatttccatcactgcacaacatggtgagtactcagtttcctcattttttggatgtttgctttctttctttgtcttttcagtaatttaatta |
40625353 |
T |
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| Q |
207 |
cgcaatatacccttttcaatgagctattggaatttatctattgtggcttgttctgaacaaaggcttatattgtgattcaacaaactcttggtcaacttac |
306 |
Q |
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| T |
40625352 |
cgcaaaatacccttttcagtgagctattggaatttatctattgtggcttgttctgaacaaaggcttatattgtgattcaacaaactcttggtcaacttac |
40625253 |
T |
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| Q |
307 |
cgtgcaaattgaact |
321 |
Q |
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||||||||||||||| |
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| T |
40625252 |
cgtgcaaattgaact |
40625238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 40639742 - 40640041
Alignment:
| Q |
7 |
aacactctgcttgagttgaagttaacaaacatgtcaatggatatcaatgctgaggcgcataacatcccacca---------aattgtctagtggttaaaa |
97 |
Q |
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| T |
40639742 |
aacactctgctagaattgaagttaacagacatgccaagggaaatcaatgatgaggcgcagaacatcccaacattcctacccaattgtcgagtcgtctaaa |
40639841 |
T |
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| Q |
98 |
ctaatcttcagtagaatatatttccatcactgcacaacatggtgagt-actcagtttcctcatttttt---ggatgt----ttgctttctttctttgtct |
189 |
Q |
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| T |
40639842 |
ctaattttcagtagaagatatttccatcactgcacaacatggcgagtcactcagtttcctaattttttttaagatgttttcttgctttctttctttgtct |
40639941 |
T |
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| Q |
190 |
tttcagtagtttaattacgcaatatacccttttcaatgagctattggaatttatctattgtggcttgttctgaacaaaggcttatattgtgattcaacaa |
289 |
Q |
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| T |
40639942 |
tttcagtagtttaattacgcaaaataccctttacagtgagctactggaatttatctactgtggcttgttctgaatgaaggcttatatggggattcaacaa |
40640041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 40660507 - 40660684
Alignment:
| Q |
7 |
aacactctgcttgagttgaagttaacaaacatgtcaatggatatcaatgctgaggcgcataacatcccaccaaattgtctagtggttaaaactaatcttc |
106 |
Q |
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|||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| | ||||||| ||| || ||||||| ||| |
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| T |
40660507 |
aacactctgcttgaattgaagttaacaaacatgccaatgaaaatcaatgttgaggcgcataacatcccaaccaattgtcaagtcgtccaaactaaatttc |
40660606 |
T |
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| Q |
107 |
agtag---aatatatttccatcactgcacaacatggtgagtactcagtttcctcattttttggatgtttgctttcttt |
181 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||||||| |||| |||||| ||||||||| ||||| |
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| T |
40660607 |
agtagaataatatatttccatcattgcacagcatggtgagtactcagttgcctcgttttttatatgtttgctctcttt |
40660684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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