View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_high_14 (Length: 278)

Name: NF5139_1D_high_14
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_high_14
NF5139_1D_high_14
[»] chr2 (1 HSPs)
chr2 (120-253)||(37535195-37535328)
[»] chr4 (2 HSPs)
chr4 (16-109)||(9546170-9546263)
chr4 (120-214)||(861958-862052)
[»] chr3 (2 HSPs)
chr3 (120-214)||(20614783-20614877)
chr3 (139-214)||(37043388-37043464)
[»] chr5 (1 HSPs)
chr5 (120-214)||(24255095-24255189)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 37535195 - 37535328
Alignment:
Q  120 gaagtattataccgaatctatcaagaatgaaaacaagccaataaaaaatatctattagcggaaattatggaaagtggggagaaaaatatggaaattgatg 219  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  37535195 gaagtattataccgaatccatcaagaatgaaaacaagccaatcaaaaacatctgttagcggaaattatggaaagtgaggagaaaaatatggaaattgatg 37535294  T
Q  220 gatggcatacatgccacatgtttcgtgaaatact 253  Q
    ||||||||||||||||||||||||||||||||||    
T  37535295 gatggcatacatgccacatgtttcgtgaaatact 37535328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 9546263 - 9546170
Alignment:
Q  16 agaagtagaagaactgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546263 agaagaagaagaactgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggt 9546170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 861958 - 862052
Alignment:
Q  120 gaagtattataccgaatctatcaagaatgaaaacaagccaataaaaaatatctattagcggaaattatggaaagtggggagaaaaatatggaaat 214  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||  | || | ||||||||| |||| | ||||||||||||| ||||||||    
T  861958 gaagtattatcccgaatcaatcaagaatgaaaacaagccaataaaaagcagctgtgagcggaaatcatgggaggtggggagaaaaagatggaaat 862052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 20614783 - 20614877
Alignment:
Q  120 gaagtattataccgaatctatcaagaatgaaaacaagccaataaaaaatatctattagcggaaattatggaaagtggggagaaaaatatggaaat 214  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||  |  | | ||||||||| |||| | ||||||||||||| ||||||||    
T  20614783 gaagtattatcccgaatctatcaagaataaaaacaagtcaataaaaagcagatgtgagcggaaatcatgggaggtggggagaaaaagatggaaat 20614877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 37043388 - 37043464
Alignment:
Q  139 atcaagaatgaaaacaagccaataaaaaatatctattagcggaaattatggaaagt-ggggagaaaaatatggaaat 214  Q
    |||||||||||||| |||||||| ||||| | || |||| |||||| |||| | || ||||||||||| ||||||||    
T  37043388 atcaagaatgaaaataagccaattaaaaacagctgttagtggaaatcatgggaggtgggggagaaaaagatggaaat 37043464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 24255095 - 24255189
Alignment:
Q  120 gaagtattataccgaatctatcaagaatgaaaacaagccaataaaaaatatctattagcggaaattatggaaagtggggagaaaaatatggaaat 214  Q
    |||| ||||| |||| || |||| ||||||||||||||||||||||| ||  | | || |||||| |||| | |||| |||||||| ||||||||    
T  24255095 gaagaattatcccgactcaatcacgaatgaaaacaagccaataaaaagtagttttgagaggaaatcatgggaggtggagagaaaaagatggaaat 24255189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University