View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_high_16 (Length: 240)

Name: NF5139_1D_high_16
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_high_16
NF5139_1D_high_16
[»] chr6 (13 HSPs)
chr6 (22-240)||(33263767-33263985)
chr6 (22-214)||(33058707-33058899)
chr6 (25-238)||(33272912-33273125)
chr6 (22-211)||(33401761-33401950)
chr6 (22-214)||(31561553-31561745)
chr6 (22-214)||(33286686-33286878)
chr6 (22-216)||(9167913-9168107)
chr6 (22-228)||(33411082-33411288)
chr6 (22-228)||(33305616-33305822)
chr6 (22-212)||(33389215-33389408)
chr6 (22-235)||(33643346-33643562)
chr6 (22-109)||(28869515-28869605)
chr6 (160-229)||(33359846-33359915)
[»] chr2 (1 HSPs)
chr2 (22-214)||(17439572-17439764)
[»] scaffold0428 (1 HSPs)
scaffold0428 (22-230)||(7888-8096)
[»] chr4 (8 HSPs)
chr4 (84-216)||(31502921-31503053)
chr4 (95-216)||(31497737-31497858)
chr4 (22-66)||(31477715-31477759)
chr4 (93-211)||(31477789-31477907)
chr4 (22-66)||(31502838-31502882)
chr4 (93-215)||(31149482-31149604)
chr4 (22-65)||(31527696-31527739)
chr4 (22-66)||(31158535-31158579)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 33263985 - 33263767
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  33263985 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttgcaagagctaggccgaaaaattg 33263886  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctata 221  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263885 tgcaaaatagttcatgcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctata 33263786  T
Q  222 tagaaataaataaaaaaca 240  Q
    |||||||||||||||||||    
T  33263785 tagaaataaataaaaaaca 33263767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 33058899 - 33058707
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||  ||||  ||||||||||||||||||||||||| |||||||||||    
T  33058899 gatattggattaagagttctcattgataaatcacttgtaagcattagttattcaattattaacatgcattctttgttggaagagctaggcagaaaaattg 33058800  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 214  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33058799 tgcaaaatagttcaagcaaagaaccaagaaaatggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 33058707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 33273125 - 33272912
Alignment:
Q  25 attggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattgtgc 124  Q
    ||||||||||||||||||| || |||||||||||||||| || || | |||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  33273125 attggattaagtgttctcaatgataaatcacttataagccttggtgagtcaacaattataatgcattctttgttggaagagctgggcagaaaaattgtgc 33273026  T
Q  125 aaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctatatag 224  Q
    || | | |||||||||||||| |||||| ||||| ||| ||||||||| ||||||| || ||||||||| ||||||||| |||||||| |  || | |||    
T  33273025 aagaaaattcaagcaaagagcgaagaaagtggagcagggtgtggtccgaaaaacaactcaacaatgttacgatggagaaaatggtaaactttctctctag 33272926  T
Q  225 aaataaataaaaaa 238  Q
    ||||||||||||||    
T  33272925 aaataaataaaaaa 33272912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 33401950 - 33401761
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||| |  |  ||  |||  |||||||||||||||| ||||||||| |||||||||||    
T  33401950 gatattggaataagagttctcattgataaatcacttataagcattaatggtcaaaatattgaaatgcattctttgttgaaagagctaggcagaaaaattg 33401851  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 211  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  33401850 tgcaaaaaacttcaagcaaagagccaagaaaatggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 31561553 - 31561745
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||  |||||||| ||||| |||||||| |||||||||||| |||| |||||||||||    
T  31561553 gatattggattaagagttctccttgataaatcacttataagcattgataattcaataattaaaatgcattatttgttggaagaactaggcagaaaaattg 31561652  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 214  Q
    ||||| | |||||||||||||||| |||||| ||||| ||||||||||||    ||||| |||||||||||| ||||||||| ||||||||||    
T  31561653 tgcaagaaagttcaagcaaagagcaaagaaagtggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagt 31561745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 33286878 - 33286686
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| ||||| |||| |||||||||||| | ||||| |  |  ||   ||  |||||||||||||||||||||||||| |||||||||||    
T  33286878 gatattggattaagagttcttattgataaatcacttatgaacattaatggtcaaaatcttgaaatgcattctttgttggaagagctaggcagaaaaattg 33286779  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||||    
T  33286778 tgcaaaatagttcaagcaaagagccaagaaaatggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagt 33286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 9168107 - 9167913
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| | |||||   |||| |||||||| |||||| |||||||| | |||||||||||    
T  9168107 gatattggattaagagttctcattgataaatcacttataagcattaattattcagagattaaaatgcattatttgttagaagagctgggcagaaaaattg 9168008  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtag 216  Q
    ||||| | | |||||||||||||| |||||||||||| ||||||||||||  ||||||| |||||||||||  |||||||| |||||||||||||    
T  9168007 tgcaagaaaattcaagcaaagagcaaagaaaatggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtag 9167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 33411288 - 33411082
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||| | |||||||||| |||||||||||||||||||    || |||  |||| |||||||||||||||||||||||||| |||||||||||    
T  33411288 gatattggattaggagttctcattgataaatcacttataagcattgaggatgcaaatattaaaatgcattctttgttggaagagctaggcagaaaaattg 33411189  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctata 221  Q
    ||||| | | |||||||||||||| |||||| ||||| ||| | ||||||  ||||||| ||||||| |||| ||||||||||||||||||||| || |     
T  33411188 tgcaagaaaattcaagcaaagagcaaagaaagtggagcaggatctggtccaaaaaacaactctacaacgttatgatggagaatatggtaaagtaactgtt 33411089  T
Q  222 tagaaat 228  Q
    |||||||    
T  33411088 tagaaat 33411082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 33305822 - 33305616
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| ||||||| || |||||||||||||| || || | |||||   |||  ||| |||||||||||||||||||||| |||||||||||    
T  33305822 gatattggattaagagttctcaatgataaatcacttataaacactaattattcacatattgaaatacattctttgttggaagagctaggcagaaaaattg 33305723  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctata 221  Q
    ||||| | | |||||||||||||| |||||| ||||| ||| | ||||||  ||| ||| |||||||||||| | ||||||||||||||||||| || |     
T  33305722 tgcaagaaaattcaagcaaagagcaaagaaagtggagcagggtctggtccaaaaagcaactctacaatgttatggtggagaatatggtaaagtaactgtt 33305623  T
Q  222 tagaaat 228  Q
    |||||||    
T  33305622 tagaaat 33305616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 33389408 - 33389215
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagta---attcaagaattataatgcattctttgttggaagagctagccagaaaaa 118  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| ||   |||||   |||  |||||||||||| ||||  ||||||| ||||||||    
T  33389408 gatattggattaagagttctcattgataaatcacttataagcattaatagtgattcagtgattgaaatgcattctttattggttgagctaggcagaaaaa 33389309  T
Q  119 ttgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 212  Q
    |||||| | | | |||||||||||||| |||||| ||||| ||| ||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  33389308 ttgtgcgagaaaattcaagcaaagagcaaagaaagtggagcagggtgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 33643346 - 33643562
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaa---gaattataatgcattctttgttggaagagctagccagaaaaa 118  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||  | ||||||   | |||  |||||||||| |||| ||||||||||  | |||||    
T  33643346 gatattgggttaagagttctcattgataaatcacttataagcattgattattcaatgaggattgaaatgcattctctgttagaagagctaggaaaaaaaa 33643445  T
Q  119 ttgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagct 218  Q
    |||||||| | | |||||||||||||| |||||| ||||| ||| ||||||||  ||||||| |||||||||||  ||||||||||||||||||  ||||    
T  33643446 ttgtgcaagaaaattcaagcaaagagcaaagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaatcagct 33643545  T
Q  219 atatagaaataaataaa 235  Q
     | || |||||||||||    
T  33643546 gtttaaaaataaataaa 33643562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 28869515 - 28869605
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattca---agaattataatgcattctttgttggaagagctag 109  Q
    |||||||||||||  |||||||||| |||||| ||||||||||||  | |||||   || |||  |||||||||||||||| |||||||||    
T  28869515 gatattggattaaaagttctcattgataaatcccttataagcattgatcattcaacgaggattgaaatgcattctttgttgaaagagctag 28869605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 33359915 - 33359846
Alignment:
Q  160 aggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctatatagaaata 229  Q
    ||||||||||||   |||||| | | |||||||| || ||||||||||||||||||||| | ||||||||    
T  33359915 aggttgtggtcccataaacaaatttgcaatgttatgaaggagaatatggtaaagtagctgtttagaaata 33359846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 17439572 - 17439764
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    |||||||||||||| |||||||||  |||||||||||||||||||| |  |  ||  |||  |||||||||||||||||||||||| | |||||||||||    
T  17439572 gatattggattaagagttctcattaataaatcacttataagcattaatggtcaaaacattgaaatgcattctttgttggaagagctgggcagaaaaattg 17439671  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 214  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||  || ||||| ||||  ||||||  |||| ||| ||||||||||    
T  17439672 tgcaaaatagttcaagcaatgacccaagaaaatggagcaggttgtggtctacagaacaactctatgatgttattatggcgaaaatggtaaagt 17439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 8096 - 7888
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcattagtaattcaagaattataatgcattctttgttggaagagctagccagaaaaattg 121  Q
    ||||||||||| |  |||||||||| ||||||||| |||| ||||  |  |||||   ||  |||||||||||||||||||||| ||| |||||||||||    
T  8096 gatattggatttatagttctcattgataaatcactaataaccattcatggttcaattgttgaaatgcattctttgttggaagagttaggcagaaaaattg 7997  T
Q  122 tgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagctata 221  Q
    ||||| | | |||||||||||||| |||||| ||||| ||| ||||||||  | ||||| |||||||||||| |||||||||||||||||  ||| | ||    
T  7996 tgcaagaaaattcaagcaaagagcaaagaaagtggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaatttagttgta 7897  T
Q  222 tagaaataa 230  Q
    |||||||||    
T  7896 tagaaataa 7888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 31502921 - 31503053
Alignment:
Q  84 aatgcattctttgttggaagagctagccagaaaaattgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattc 183  Q
    |||||||  |||||||||||||||||  ||||||||||| ||| | | ||||||||||||||||||||| ||||| ||||||||||  | || |||| ||    
T  31502921 aatgcatggtttgttggaagagctaggaagaaaaattgttcaagaaaattcaagcaaagagccaagaaagtggagcaggttgtggttagaaacacaagtc 31503020  T
Q  184 tacaatgttaagatggagaatatggtaaagtag 216  Q
     ||||||| | | ||||||| ||||||||||||    
T  31503021 gacaatgtcatgttggagaaaatggtaaagtag 31503053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 31497737 - 31497858
Alignment:
Q  95 tgttggaagagctagccagaaaaattgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaa 194  Q
    ||||| |||| |||| |||||| ||||| ||| | | ||||||||| |||  |||||| ||||| ||||||||||    | ||||||||||| ||||||     
T  31497737 tgttgcaagaactaggcagaaatattgttcaagaaaattcaagcaaggagagaagaaagtggagcaggttgtggttgaaagaacaattctacgatgttat 31497836  T
Q  195 gatggagaatatggtaaagtag 216  Q
    | ||||||||||||||||||||    
T  31497837 gttggagaatatggtaaagtag 31497858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 31477715 - 31477759
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcatt 66  Q
    |||||||||||||| |||||||||| |||||||||||||||||||    
T  31477715 gatattggattaagagttctcattgataaatcacttataagcatt 31477759  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 31477789 - 31477907
Alignment:
Q  93 tttgttggaagagctagccagaaaaattgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtggtccgcaaaacaattctacaatgtt 192  Q
    |||||||||||||||||  ||| ||||||| ||| | | |||||||||||||| |||||| ||||| ||| | |||| || ||||||| || || ||||     
T  31477789 tttgttggaagagctagggagagaaattgttcaagaaaattcaagcaaagagcaaagaaactggaggaggatatggttcgtaaaacaagtcaacgatgtc 31477888  T
Q  193 aagatggagaatatggtaa 211  Q
    | | ||||||| |||||||    
T  31477889 atgttggagaaaatggtaa 31477907  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 31502838 - 31502882
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcatt 66  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  31502838 gatataggattaagagttctcattgataaatcacttataagcatt 31502882  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 31149604 - 31149482
Alignment:
Q  93 tttgttggaagagctagccagaaaaattgtgcaaaatagttcaagcaaagagccaagaaaatggagtaggttgtgg-tccgcaaaacaattctacaatgt 191  Q
    ||||||| ||||||| | |||||||||||| ||| | |  |||| ||||||| ||||||| ||||| ||| ||||| ||| | || |||||||| |||||    
T  31149604 tttgttgcaagagcttggcagaaaaattgttcaagaaaaatcaatcaaagagtcaagaaagtggagcaggatgtggctccac-aagcaattctataatgt 31149506  T
Q  192 taagatggagaatatggtaaagta 215  Q
    || |  ||||||||||||||||||    
T  31149505 tatgtcggagaatatggtaaagta 31149482  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 31527739 - 31527696
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcat 65  Q
    |||||||||||||| ||||||||||  |||||||||||||||||    
T  31527739 gatattggattaagagttctcattgacaaatcacttataagcat 31527696  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 31158579 - 31158535
Alignment:
Q  22 gatattggattaagtgttctcattgctaaatcacttataagcatt 66  Q
    |||||||||||||| ||||| |||| |||||||||| ||||||||    
T  31158579 gatattggattaagagttctaattgataaatcacttctaagcatt 31158535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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