View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_high_18 (Length: 208)
Name: NF5139_1D_high_18
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 33756805 - 33756905
Alignment:
| Q |
97 |
cccgccatatcaagttctccaaattcagataaaaaacaataaataacctccttacatataatgcgttaattgttatacatcaaaataccttcacaagaac |
196 |
Q |
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| T |
33756805 |
cccgccatatcaagttctccaaattcagtttaaaa-caagaaataacctccttacatataatgcgttaattgttatacatcaaaataccttcacaagaac |
33756903 |
T |
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| Q |
197 |
ac |
198 |
Q |
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|| |
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| T |
33756904 |
ac |
33756905 |
T |
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Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 33854684 - 33854754
Alignment:
| Q |
128 |
aaaaacaataaataacctccttacatataatgcgttaattgttatacatcaaaataccttcacaagaacac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33854684 |
aaaaacaataaataacctccttacatataatgcgttaattgttatacatcaaaataccttcacaagaacac |
33854754 |
T |
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