View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_1D_high_3 (Length: 521)
Name: NF5139_1D_high_3
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 51405685 - 51405207
Alignment:
| Q |
20 |
atcagtagttgaattatattgttgaatcaccaagattgatgcagaagttgagaaactagaagaagccatataacttccaataggtccaagttcagcagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51405685 |
atcagtagttgaattatattgttgaatcaccaagattgatgcagaagttgagaaactagaagaagccatataacttccaataggtccaagttcagcagaa |
51405586 |
T |
|
| Q |
120 |
tcactgttactaaccaatggtgcaactggtggcattctaccaaccaatatcaaattactcttactcaattccttcaattctgtctcaatattatttttac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
51405585 |
tcactgttactaaccaatggtgcaactggtggcattctaccaaccaatatcaaattactcttactcaattccttcaatgctgtctcaatatcatttttac |
51405486 |
T |
|
| Q |
220 |
tttcaaccatcctttcctcatacttaattgactcttcattcatgctctttgcactatggaattcactccagagttgttcatcttgatttttactaccatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51405485 |
tttcaaccatcctttcctcatacttaattgactcttcattcatgctctttgcactatggaattcactccagagttgttcatcttgatttttactaccatc |
51405386 |
T |
|
| Q |
320 |
atggctaccttcaatatcatcaatcacaactgttttgctcttatcttgtgctacaccaaccaatttagcaccaaaagacaatgtcattccaggtggagaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51405385 |
atggctaccttcaatatcatcaatcacaactgttttgctcttatcttgtgctacaccaaccaatttagcaccaaaagacaatgtcattccaggtggagaa |
51405286 |
T |
|
| Q |
420 |
atgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51405285 |
atgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgc |
51405207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 487
Target Start/End: Original strand, 29981430 - 29981480
Alignment:
| Q |
437 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttc |
487 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttc |
29981480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University