View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_high_7 (Length: 407)

Name: NF5139_1D_high_7
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_high_7
NF5139_1D_high_7
[»] chr3 (1 HSPs)
chr3 (19-407)||(54893628-54894016)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 54893628 - 54894016
Alignment:
Q  19 catcaaaactatgtgtattggacagaaatatgaaatttcaagcattggatttaaaatacatctactgtaaagcatccatactctagcaactaagactcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54893628 catcaaaactatgtgtattggacagaaatatgaaatttcaagcattggatttaaaatacatctactgtaaagcatgcatactctagcaactaagactcca 54893727  T
Q  119 atatcaaattaaatggttagtataatcattgcaatgccattccatagctgaatggcattaaaatacaaaactttctccaatttccaatgtatcgtgcatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54893728 atatcaaattaaatggttagtataatcattgcaatgccattccatagctgaatggcattaaaatacaaaactttctccaatttccaatgtatcgtgcatc 54893827  T
Q  219 cttcttctgtatatattcttttttaaatccttttaaccatcactgtcatttttcagcttccaccaagaatgatcttaatcgtacaaggagccttgggtgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54893828 cttcttctgtatatattcttttttaaatccttttaaccatcactgtcatttttcagcttccaccaagaatgatcttaatcgtacaaggagccttgggtgt 54893927  T
Q  319 gattgatggttaattgctagtatagtcttaattggtagttccagactgtgtaatacctcggaagaagaaaaaatgtatcaactgtaagt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54893928 gattgatggttaattgctagtatagtcttaattggtagttccagactgtgtaatacctcggaagaagaaaaaatgtatcaactgtaagt 54894016  T

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