View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_11 (Length: 362)
Name: NF5139_1D_low_11
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 7265862 - 7266125
Alignment:
| Q |
24 |
tgcacatgagactgtacgaggacatgcttgttccaacttagatttgatctcatcaatcacttcaaaacctcgaatggaatttttgttaggtccaccannn |
123 |
Q |
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| T |
7265862 |
tgcacatgagactgtacgaggacatgcttgttccaacttagatttgatctcatcgatcacttcaaaacctcgaacggaatttttgttaggtccaccattt |
7265961 |
T |
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| Q |
124 |
nnnncactgacaattgtggcgctatcgtccaacaaaattgatgcatcgcagccctgtcgttaaaagtataatgaagagaaatttttcagctccttgacat |
223 |
Q |
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| T |
7265962 |
ttttcactgacaattgtggcgctatcgtccaacaaaattgatgcatcgcagccctgtcgttaaaagtacaatgaagagaaatttttcagctccttgacat |
7266061 |
T |
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| Q |
224 |
atgcatgcaaaagaatccaaagcaaatttaacaaatgcaaagcaatatatactacaaaatagct |
287 |
Q |
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| T |
7266062 |
atgcatgcaaaagaatccaaagcaaatttaacaaatggaaagcaatatatactacaaaatagct |
7266125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 157064 - 156994
Alignment:
| Q |
281 |
aatagcttgtgaaagtttacaatgtcaaggcgtcttcgtcgatatctttaaatgtctctaatttttgcaac |
351 |
Q |
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| T |
157064 |
aatagcttgtgaaagtttacaatgtcaaggcgtcttcatcgatatctttaaatgtctctaatttttgcaac |
156994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 134490 - 134452
Alignment:
| Q |
313 |
tcttcgtcgatatctttaaatgtctctaatttttgcaac |
351 |
Q |
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| T |
134490 |
tcttcgtccatatctttaaacgtctctaatttttgcaac |
134452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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