View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_14 (Length: 324)
Name: NF5139_1D_low_14
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 7267605 - 7267907
Alignment:
| Q |
12 |
tagtgatacaggcaatgtgtgaatttatcaacctcatagctcatacggttatgtgatttatgacttggtcgtatgaaaagttaaagctagaatgcaattt |
111 |
Q |
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| T |
7267605 |
tagtgatacaggcaatgtgtgaatttatcaacctcatagctcatacggttatgtgatttatgacttggtcgtatgaaaagttaaagctagaatgcaattt |
7267704 |
T |
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| Q |
112 |
agtgatttaggaaaataaataacaaaatgaaccaatctttgagggatgtgttcaattcaatcaattgttctatgtagaaaatcatatagtcaaataaact |
211 |
Q |
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| T |
7267705 |
agtgatttaggaaaataaataacaaaatggaccaatctttgagggatgtgttcaattcaatcaattgttctatgtagaaaatcatatagtcaaataaact |
7267804 |
T |
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| Q |
212 |
taatatac---nnnnnnnnagatagacgcagtgataataatcactttataactcacacacataagtggatgagttgaggtttaaactctaatcatgatgt |
308 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7267805 |
taatatactttttttttttagatagacgcaatgataataatcactttataactcacacacataagtggatgagttgaggtttgaactctaatcatgatgt |
7267904 |
T |
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| Q |
309 |
cca |
311 |
Q |
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| T |
7267905 |
cca |
7267907 |
T |
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