View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_15 (Length: 323)
Name: NF5139_1D_low_15
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 4195530 - 4195832
Alignment:
| Q |
2 |
tatggtgttttgttttgtgatagcgcggttgtgcacgtgctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcatgattctg |
101 |
Q |
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| T |
4195530 |
tatggtgttttgttttgtgatagcgcggttgtgcacgtgctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcatgattctg |
4195629 |
T |
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| Q |
102 |
gtcattatcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaa |
201 |
Q |
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| T |
4195630 |
gtcattatcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaa |
4195729 |
T |
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| Q |
202 |
tcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttaccnnnnnnngttgtttcctccaagttcttcacttcacta |
301 |
Q |
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| T |
4195730 |
tcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttacctttttttgttgtttcctccaagttcttcacttcacta |
4195829 |
T |
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| Q |
302 |
act |
304 |
Q |
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||| |
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| T |
4195830 |
act |
4195832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 4186500 - 4186760
Alignment:
| Q |
4 |
tggtgttttgttttgtgatagcgcggttgtgcacgtgctttctggaggattaatgggtcttctt-tggattcaaagtggttggattggtcatgattctgg |
102 |
Q |
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|||||||||||||| |||||| || |||| |||| || ||| || ||||||||| ||||| ||||||||||||||||||||| ||||||||||| | |
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| T |
4186500 |
tggtgttttgttttctgatagttcgtgtgtgtgcgtgtgttgtggtgggttaatgggt-ttcttgtggattcaaagtggttggattagtcatgattcttg |
4186598 |
T |
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| Q |
103 |
tcattatcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaat |
202 |
Q |
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| T |
4186599 |
tcactatcagattatggcgaactgtaattggaactggtttgttcagatcctttctggaaattttctttctagtataagcatggagtggtggaaatggaac |
4186698 |
T |
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| Q |
203 |
cataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttacc |
264 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4186699 |
cacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttcaacatttacc |
4186760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 24417427 - 24417348
Alignment:
| Q |
171 |
ctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgat |
250 |
Q |
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|||||||||| |||| ||||||||||||| ||||||||| || ||| ||||||| ||||||||||||| |||||||||| |
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| T |
24417427 |
ctggtataagtattgcttggtggaaatggactcataatgctcatcatattgcttgcaatagtcttgattatgatcctgat |
24417348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 24417512 - 24417480
Alignment:
| Q |
86 |
attggtcatgattctggtcattatcaggttatg |
118 |
Q |
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| T |
24417512 |
attggtcatgattctggtcattatgaggttatg |
24417480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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