View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_16 (Length: 322)
Name: NF5139_1D_low_16
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 23333544 - 23333847
Alignment:
| Q |
4 |
tcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatc |
103 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333544 |
tcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatc |
23333643 |
T |
|
| Q |
104 |
gcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333644 |
gcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatca |
23333743 |
T |
|
| Q |
204 |
aaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
23333744 |
aaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttat |
23333843 |
T |
|
| Q |
304 |
gtcc |
307 |
Q |
| |
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|||| |
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| T |
23333844 |
gtcc |
23333847 |
T |
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