View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_low_17 (Length: 299)

Name: NF5139_1D_low_17
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_low_17
NF5139_1D_low_17
[»] chr4 (15 HSPs)
chr4 (129-284)||(38147357-38147519)
chr4 (156-278)||(12639721-12639843)
chr4 (164-278)||(28103806-28103920)
chr4 (163-252)||(917683-917772)
chr4 (156-272)||(43012754-43012870)
chr4 (185-272)||(23643431-23643518)
chr4 (185-250)||(12639208-12639273)
chr4 (156-272)||(54714873-54714989)
chr4 (188-250)||(28104360-28104421)
chr4 (188-250)||(919115-919176)
chr4 (156-250)||(43013130-43013224)
chr4 (156-224)||(12629834-12629902)
chr4 (243-274)||(918651-918682)
chr4 (163-224)||(25163430-25163491)
chr4 (236-276)||(23037998-23038038)
[»] chr2 (9 HSPs)
chr2 (157-278)||(4329599-4329720)
chr2 (156-278)||(39865298-39865420)
chr2 (156-278)||(29770766-29770888)
chr2 (144-272)||(30674429-30674557)
chr2 (157-272)||(9074598-9074713)
chr2 (159-250)||(4330136-4330226)
chr2 (168-272)||(9914204-9914308)
chr2 (188-250)||(29771299-29771360)
chr2 (156-250)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (1-128)||(45395432-45395560)
chr3 (156-278)||(23566889-23567011)
chr3 (158-278)||(39737724-39737844)
chr3 (159-272)||(785770-785883)
chr3 (185-272)||(30385749-30385836)
chr3 (188-250)||(39737232-39737293)
chr3 (186-272)||(53153855-53153941)
chr3 (158-250)||(23566432-23566522)
chr3 (12-78)||(50470355-50470421)
chr3 (177-250)||(53153517-53153590)
[»] chr7 (11 HSPs)
chr7 (156-278)||(31166954-31167076)
chr7 (168-274)||(21971546-21971651)
chr7 (177-260)||(27596002-27596084)
chr7 (153-272)||(28750927-28751045)
chr7 (157-272)||(38916392-38916507)
chr7 (168-272)||(27230474-27230578)
chr7 (155-270)||(15577468-15577578)
chr7 (157-250)||(21972092-21972184)
chr7 (164-272)||(32741787-32741895)
chr7 (157-250)||(38916045-38916138)
chr7 (217-276)||(21948149-21948208)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-129)||(19923-20052)
[»] chr8 (7 HSPs)
chr8 (160-278)||(26759207-26759325)
chr8 (165-278)||(146644-146757)
chr8 (153-272)||(308301-308420)
chr8 (164-272)||(186682-186790)
chr8 (156-247)||(187049-187140)
chr8 (188-250)||(147190-147251)
chr8 (218-272)||(25277141-25277195)
[»] chr6 (7 HSPs)
chr6 (1-128)||(17922863-17922991)
chr6 (158-272)||(8700890-8701004)
chr6 (185-272)||(12307301-12307388)
chr6 (185-272)||(7727381-7727468)
chr6 (163-272)||(604984-605096)
chr6 (156-250)||(12306970-12307064)
chr6 (156-250)||(8701263-8701357)
[»] chr5 (7 HSPs)
chr5 (156-278)||(39121834-39121956)
chr5 (12-128)||(3623478-3623594)
chr5 (164-272)||(14393983-14394091)
chr5 (156-271)||(20983543-20983658)
chr5 (164-272)||(25672272-25672380)
chr5 (159-250)||(20983842-20983933)
chr5 (156-250)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (164-272)||(40888792-40888900)
chr1 (156-224)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 38147357 - 38147519
Alignment:
Q  129 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 221  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  222 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 38147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 12639843 - 12639721
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  12639743 aaaagctatattcaatactcttt 12639721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 28103806 - 28103920
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  264 tattcaatactcttt 278  Q
    |||||||||||||||    
T  28103906 tattcaatactcttt 28103920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  163 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 252  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  256 aaaagctatattcaata 272  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  256 aaaagctatattcaata 272  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 224  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  243 aattaaaaataataaaagctatattcaatact 274  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 25163430 - 25163491
Alignment:
Q  163 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 224  Q
    ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163430 tggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 23038038 - 23037998
Alignment:
Q  236 gtcaactaattaaaaataataaaagctatattcaatactct 276  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactct 23037998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 4329599 - 4329720
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 256  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  257 aaagctatattcaatactcttt 278  Q
    ||||||||||||||||||||||    
T  4329699 aaagctatattcaatactcttt 4329720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 39865420 - 39865298
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  39865320 aaaagctatattcaatactcttt 39865298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 29770766 - 29770888
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||| ||||||||||||    
T  29770866 aaaagctataatcaatactcttt 29770888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  144 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 243  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  244 attaaaaataataaaagctatattcaata 272  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 256  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  257 aaagctatattcaata 272  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  159 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  268 caata 272  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 39864768 - 39864860
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||||| || | ||||  || |||||||||  |||||| |||||||||||||| |||| |||||  |||||||| |||||||||    
T  39864768 ggggcactggataagga-caattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa-tgtaaactatgtcaattaattaaaa 39864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 45395432 - 45395560
Alignment:
Q  1 tcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcat 99  Q
    ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  45395432 tcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctcgtgcat 45395531  T
Q  100 ggtttatgtcgtgtaataaagcattttcc 128  Q
    |||||||||||||||||||||||||||||    
T  45395532 ggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 23567011 - 23566889
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  23566911 aaaagctatattcaatactcttt 23566889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 39737844 - 39737724
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 257  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  258 aagctatattcaatactcttt 278  Q
    ||||||||||||||| |||||    
T  39737744 aagctatattcaatattcttt 39737724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  159 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 258  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  259 agctatattcaata 272  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  186 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  12 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 78  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  177 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 31167076 - 31166954
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  256 aaaagctatattcaatactcttt 278  Q
    |||||||||||||||||||||||    
T  31166976 aaaagctatattcaatactcttt 31166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  268 caatact 274  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  177 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 260  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  153 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 252  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  253 aataaaagctatattcaata 272  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 256  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  257 aaagctatattcaata 272  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  168 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 267  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  268 caata 272  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  155 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 254  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  255 taaaagctatattcaa 270  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  264 tattcaata 272  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  157 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 21948149 - 21948208
Alignment:
Q  217 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactct 276  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || |||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactct 21948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19923 - 20052
Alignment:
Q  1 tcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcat 99  Q
    ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||    
T  19923 tcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctcgtgcat 20022  T
Q  100 ggtttatgtcgtgtaataaagcattttcca 129  Q
    ||||||||||||||||||||||||||||||    
T  20023 ggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 26759207 - 26759325
Alignment:
Q  160 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaa 259  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  260 gctatattcaatactcttt 278  Q
    |||||||| ||||||||||    
T  26759307 gctatattaaatactcttt 26759325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 146644 - 146757
Alignment:
Q  165 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 264  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  265 attcaatactcttt 278  Q
    ||||||||||||||    
T  146744 attcaatactcttt 146757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  153 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 252  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  253 aataaaagctatattcaata 272  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  264 tattcaata 272  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 247  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  188 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  218 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 17922863 - 17922991
Alignment:
Q  1 tcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 98  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17922863 tcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttctcgtgca 17922961  T
Q  99 tggtttatgtcgtgtaataaagcattttcc 128  Q
    ||||||||||||||||||||||||||||||    
T  17922962 tggtttatgtcgtgtaataaagcattttcc 17922991  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  158 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 257  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  258 aagctatattcaata 272  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  185 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 272  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  163 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataaaa 259  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  260 gctatattcaata 272  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 8701357 - 8701263
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||| |||| || | ||||||| ||||||||||||  |||||| || ||| |  | ||||||||||  ||||| |||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaa 8701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 39121956 - 39121834
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  256 aaaagctatattcaatactcttt 278  Q
    ||||| |||||||||||||||||    
T  39121856 aaaagttatattcaatactcttt 39121834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 3623478 - 3623594
Alignment:
Q  12 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcatggtttatgtcgt 111  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| |||||||||||||||| | ||||    
T  3623478 aaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgt 3623577  T
Q  112 gtaataaagcattttcc 128  Q
      |||||||||||||||    
T  3623578 caaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  264 tattcaata 272  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 255  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  256 aaaagctatattcaat 271  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  264 tattcaata 272  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 20983933 - 20983842
Alignment:
Q  159 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    |||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  20983933 gcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 20983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 14394438 - 14394344
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 250  Q
    ||||||||| ||||| || | ||||||| ||||||||||||  |||||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  14394438 ggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 14394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  164 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 263  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  264 tattcaata 272  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  156 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 224  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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