View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_1D_low_18 (Length: 297)
Name: NF5139_1D_low_18
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_18 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 12742288 - 12742566
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat--gtgtannnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12742288 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtatttttttt |
12742387 |
T |
|
| Q |
99 |
ncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12742388 |
tcaaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
12742486 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742487 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
12742566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 10328546 - 10328285
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgtannnnnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
10328546 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttc |
10328447 |
T |
|
| Q |
101 |
aaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattta |
200 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10328446 |
aaacacaccaatatgtccattgatgttgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattta |
10328348 |
T |
|
| Q |
201 |
gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328347 |
gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
10328285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 18354828 - 18354551
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat--gtgtannnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
18354828 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtatttttttt |
18354729 |
T |
|
| Q |
99 |
ncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18354728 |
-caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
18354631 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18354630 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
18354551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 23348501 - 23348224
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgtannnnnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23348501 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtgtttttttttt |
23348402 |
T |
|
| Q |
101 |
-aaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
199 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
23348401 |
taaacacaccaatatgtccattaatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattaaaaatatgattgcgaagtatattt |
23348303 |
T |
|
| Q |
200 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348302 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
23348224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9044402 - 9044681
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat--gtgtannnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9044402 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtatttttttt |
9044501 |
T |
|
| Q |
99 |
n-caaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatat |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9044502 |
ttcaaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatat |
9044600 |
T |
|
| Q |
198 |
ttagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044601 |
ttagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
9044681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30442067 - 30441789
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgt--annnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |
|
|
| T |
30442067 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcatatgtttatttttttt |
30441968 |
T |
|
| Q |
99 |
ncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30441967 |
tcaaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
30441869 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30441868 |
tagttattcaacattccttacgtttaattcctttattttgtgcgggttctgctgtcattttgggagcttttctggtggtg |
30441789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7473006 - 7472775
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat--gtgtannnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
7473006 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtatttttttt |
7472907 |
T |
|
| Q |
99 |
ncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7472906 |
tcaaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
7472808 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7472807 |
tagttattcaacattccttacgttcaattcctt |
7472775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 43070903 - 43070626
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat--gtgtannnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
43070903 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtatttttttt |
43070804 |
T |
|
| Q |
99 |
ncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43070803 |
-caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
43070706 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070705 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtg |
43070626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 53972807 - 53972545
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgtannnnnnnnn- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53972807 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttt |
53972708 |
T |
|
| Q |
100 |
caaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53972707 |
caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt |
53972609 |
T |
|
| Q |
200 |
agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
263 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53972608 |
agttattcaacattccttaagttcaattcatttatcttgcgcgggttctgctgtcattttggga |
53972545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 19881632 - 19881369
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgtannnnnnnnn- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19881632 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtttttttttttt |
19881533 |
T |
|
| Q |
100 |
-caaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatatt |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19881532 |
tcaaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatatt |
19881434 |
T |
|
| Q |
199 |
tagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
263 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881433 |
tagttattcaacatttcttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
19881369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37983008 - 37983097
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgta |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37983008 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
37983097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 1254 - 1515
Alignment:
| Q |
1 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgtannnnnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
1254 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgtgtatttttttttc |
1353 |
T |
|
| Q |
101 |
aaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1354 |
aaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattta |
1452 |
T |
|
| Q |
201 |
gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga |
263 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1453 |
gttattcaacattccttaagttcaattcctttatcttgcgatggttctgctgtcattttggga |
1515 |
T |
|
Back To:
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 33688159 - 33688074
Alignment:
| Q |
100 |
caaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgc |
188 |
Q |
| |
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|||||||||||||||| | ||||||| |||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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|
| T |
33688159 |
caaacacaccaatatgtcgattgatgttgaccttt-aatgattgtgctttcctcttcgat--gtgtttataaattgaaaatatgattgc |
33688074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 21674846 - 21674755
Alignment:
| Q |
179 |
atatgattgctaagtatatttagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttct |
271 |
Q |
| |
|
|||| ||||| |||| ||||| |||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21674846 |
atattattgccaagttgatttatttattcaacatttcttaccct-aattcctttatctggcgcgggttctgctgtcattttgggagcttttct |
21674755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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