View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_2 (Length: 537)
Name: NF5139_1D_low_2
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 21 - 471
Target Start/End: Complemental strand, 25796311 - 25795857
Alignment:
| Q |
21 |
cagctgctgctagtgtcagggttgataatacctgtagcagataaactagagttatcaacctattggctgctagtttcttatccaaatgcatgtatggact |
120 |
Q |
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| T |
25796311 |
cagctgctgctagtgtcagggttgataatacctgtagcaaataaactagagttatcaacctattggctgctagtttcttatccaaatgcatgtatggact |
25796212 |
T |
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| Q |
121 |
gacgtcgagttcaaagtgccaccgtaacttcatcatattaatcgtcaattcaaacatgtactaagttagcttataaatcagaaagaaag----tacatac |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25796211 |
gacgtcgagttcaaagtgccactgtaacttcatcatattaatcgtcaattcaaacatgtactaagttagcttataaatcagaaagaaaagtactacatac |
25796112 |
T |
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| Q |
217 |
ccaatctccaacaacaataatcaacaatattcctggttgacgaatgggacatttgactagtactgagtatccatcaaccaatgctaatgtgaaactccaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25796111 |
ccaatctccaacaacaataatcaacaatattcctggttgacgaatgggacatttgactagtactgagtatccatctaccaatgctaatgtgaaactccaa |
25796012 |
T |
|
| Q |
317 |
ggtataaccaaacccatgattgtcaccaaatagctagcacatgaataatgaacacacacaattagctacataattatagaaattcgacgaatttactaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25796011 |
ggtataaccaaacccatgattgtcaccaaatagctagcacatgaataatgaacacacacaattagctacataattatagaaattcgacgaatttactaat |
25795912 |
T |
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| Q |
417 |
gtgattgatctcaatctgctcatgcctcctttccttttatgttatgaatttacta |
471 |
Q |
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| T |
25795911 |
gtgattgatctcaatctgctcatgcctcctttccttttatgttatgaatttacta |
25795857 |
T |
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