View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_22 (Length: 268)
Name: NF5139_1D_low_22
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 7266222 - 7266489
Alignment:
| Q |
1 |
gaaagtgtattcaggaagacttagatacatgattatgttattattttatattttacttgcggtcacaattcttgatattatatcgaagtacgatcaaatg |
100 |
Q |
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| T |
7266222 |
gaaagtgtattcaggaagacttagatacatgattatgatattattttatgttttacttgcggtcacaattcttgatattatatcgaagtacgatcaaatg |
7266321 |
T |
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| Q |
101 |
tgtccggtacaaatgcaaagacttaaaaacctttatgtcgcgactcagaccagtatttagaacatgtattgctattgtgtttgaaatttacctgcacgaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266322 |
tgtccggtgcaaatgcaaagacttaaaaacctttatgtcgcgactcagaccagtatttagaacatgtattgctattgtgtttgaaatttacctgcacgaa |
7266421 |
T |
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| Q |
201 |
gcagtcgtggaagtgaagtcgaagaagagaagctgctattctgatatccttagcaatggccttctcca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266422 |
gcagtcgtggaagtgaagtcgaagaagagaagctgctattctgatatccttagcaatggccttctcca |
7266489 |
T |
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