View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_24 (Length: 256)
Name: NF5139_1D_low_24
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 43410758 - 43410929
Alignment:
| Q |
1 |
acagaaatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcaca |
100 |
Q |
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| T |
43410758 |
acagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcaca |
43410857 |
T |
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| Q |
101 |
catcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttcc |
172 |
Q |
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| T |
43410858 |
catcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttcc |
43410929 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 43410949 - 43411010
Alignment:
| Q |
192 |
tccatcctcctagctagct----tacaacttct---catctgaatgtgttgtgtctgtctgt |
246 |
Q |
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| T |
43410949 |
tccatcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgt |
43411010 |
T |
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