View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_27 (Length: 247)
Name: NF5139_1D_low_27
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 21441482 - 21441352
Alignment:
| Q |
6 |
gtgttcgtgtatgtgtcaatgtttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattcttcatataatttgtatttg |
105 |
Q |
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| T |
21441482 |
gtgttcgtgaatgtgtcaatgtttcatagtgtatgtgtctcttacgctgaacgagaatgaatttcttaaatttgtgcattattcctataatttgtatctg |
21441383 |
T |
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| Q |
106 |
aaaatttgaattttttatgttttatttagaa |
136 |
Q |
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| T |
21441382 |
aaaattcgaattttttatgttttatttagaa |
21441352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 21440967 - 21440854
Alignment:
| Q |
128 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
227 |
Q |
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| T |
21440967 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagagacacatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
21440868 |
T |
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| Q |
228 |
gacagtattgctgg |
241 |
Q |
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| T |
21440867 |
gacagtattgctgg |
21440854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 21440383 - 21440211
Alignment:
| Q |
28 |
ttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattcttcat---ataatttgtatttgaaaatttgaat------tt |
118 |
Q |
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| T |
21440383 |
ttcatagtgtatgtgtatcttaagctgtaatagaatgaatttcttaaagttgtgcattcttctttttataacttgtaatggagaattaaattctttagtt |
21440284 |
T |
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| Q |
119 |
tttatgttttatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaat |
191 |
Q |
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| T |
21440283 |
tttttttttaatttagaataaacaatcattttggcatgtaaatgtgtgacaaatgagagacacatttgagaat |
21440211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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