View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_low_28 (Length: 243)

Name: NF5139_1D_low_28
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_low_28
NF5139_1D_low_28
[»] chr4 (3 HSPs)
chr4 (26-157)||(24685857-24685988)
chr4 (81-157)||(24126983-24127059)
chr4 (26-84)||(24126889-24126947)
[»] chr1 (1 HSPs)
chr1 (26-155)||(49383590-49383719)
[»] chr6 (2 HSPs)
chr6 (81-157)||(9306202-9306278)
chr6 (26-84)||(9306313-9306371)
[»] chr2 (2 HSPs)
chr2 (81-157)||(25649180-25649256)
chr2 (26-84)||(25649291-25649349)
[»] scaffold0471 (2 HSPs)
scaffold0471 (81-157)||(11586-11663)
scaffold0471 (26-84)||(11492-11550)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 24685857 - 24685988
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatttg 125  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24685857 gagagagaggagtttgaagttctaactcttctcgtttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatttg 24685956  T
Q  126 tattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||| |||||||    
T  24685957 tattgtttatgattgattcgatccgaaaatga 24685988  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 24126983 - 24127059
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24126983 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccaaaaatga 24127059  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 24126889 - 24126947
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24126889 gagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 24126947  T

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Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 49383719 - 49383590
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatttg 125  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49383719 gagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatttg 49383620  T
Q  126 tattgtttatgattgattcgatccaaaaat 155  Q
    |||||||||||||||||| ||||| |||||    
T  49383619 tattgtttatgattgatttgatccgaaaat 49383590  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 9306278 - 9306202
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9306278 ttcccaattttaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccaaaaatga 9306202  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 9306371 - 9306313
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9306371 gagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 9306313  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 25649256 - 25649180
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  25649256 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccgaaaatga 25649180  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 25649349 - 25649291
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25649349 gagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 25649291  T

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Target: scaffold0471 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 11586 - 11663
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattcca-tttgtattgtttatgattgattcgatccaaaaatga 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11586 ttcccaattctaacctaaatttgttgtttgatttgattccattttttattgtttatgattgattcgatccaaaaatga 11663  T

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Target: scaffold0471; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 11492 - 11550
Alignment:
Q  26 gagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11492 gagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 11550  T

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