View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_low_29 (Length: 242)

Name: NF5139_1D_low_29
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_low_29
NF5139_1D_low_29
[»] chr6 (14 HSPs)
chr6 (9-242)||(33263089-33263319)
chr6 (50-219)||(33058058-33058227)
chr6 (20-219)||(33272269-33272468)
chr6 (47-219)||(33388562-33388734)
chr6 (46-217)||(28869610-28869781)
chr6 (46-219)||(33304975-33305148)
chr6 (47-242)||(33399519-33399711)
chr6 (44-219)||(31562231-31562406)
chr6 (20-219)||(33286011-33286210)
chr6 (47-219)||(33410455-33410624)
chr6 (49-219)||(33644010-33644180)
chr6 (50-219)||(33359215-33359382)
chr6 (49-172)||(9167267-9167390)
chr6 (49-115)||(33399449-33399515)
[»] chr2 (1 HSPs)
chr2 (20-219)||(17440239-17440438)
[»] scaffold1408 (1 HSPs)
scaffold1408 (20-231)||(1118-1326)
[»] scaffold0428 (1 HSPs)
scaffold0428 (20-231)||(6864-7072)
[»] chr4 (6 HSPs)
chr4 (20-155)||(31498525-31498660)
chr4 (50-219)||(31503574-31503743)
chr4 (47-155)||(31471988-31472096)
chr4 (47-155)||(31478485-31478593)
chr4 (38-158)||(31484303-31484423)
chr4 (37-157)||(31526907-31527027)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 33263089 - 33263319
Alignment:
Q  9 tggtgttcggaatgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgt 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263089 tggtgttcggtatgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgt 33263188  T
Q  109 acatccttcaaaatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattg 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263189 acatccttccaaatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattg 33263288  T
Q  209 ggcagatactgctgtgacatgaataaacaataaa 242  Q
    ||||||||   |||||||||||||||||||||||    
T  33263289 ggcagata---ctgtgacatgaataaacaataaa 33263319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 33058058 - 33058227
Alignment:
Q  50 ttcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaactctc 149  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| | ||||||||| ||||||||||    
T  33058058 ttcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacatccttccaaatctaaacgctcaagattcgggaactctc 33058157  T
Q  150 caaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    |||||||||||||||||||||| |   ||||||||| |||||||||||||||||||||||| ||||||||    
T  33058158 caaaatctattatcttttctagatttctggagtgacgtagatccaatgttctcaaattgggaagatactg 33058227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 33272269 - 33272468
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaa 119  Q
    |||||||| || || | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |    
T  33272269 atgcttactagatttttgcaattttttaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagatttttacacccttcca 33272368  T
Q  120 aatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||  ||| |   |||||| ||||||| ||||| ||||||||||||| ||||||||    
T  33272369 aatttaaccactcaagattcgggaactctccaaaatctacaatctttaatagttttctggagtaacttagacccaatcttctcaaattgggaagatactg 33272468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 33388562 - 33388734
Alignment:
Q  47 aaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaact 146  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || | ||||  ||| |||||||||||||||||||| |||||||    
T  33388562 aaattcaagtaaacaagctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaact 33388661  T
Q  147 ctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    |||||||||||| |||||||||||| |   ||||||| |||||||||||| ||||||||||||| ||||||||    
T  33388662 ctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg 33388734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 28869781 - 28869610
Alignment:
Q  46 taaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaac 145  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||  |||  || |||| |  ||||||||||||||||    
T  28869781 taaattcaagtatacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacactctttcaactttagcttctcaagatttgggaac 28869682  T
Q  146 tctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatac 217  Q
    |||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||| ||||||    
T  28869681 tctccaaaatctattatcttttctagattgctggagtgacttagatgcaatgttctcaaattgggaagatac 28869610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 33304975 - 33305148
Alignment:
Q  46 taaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaac 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| |  ||||||||| ||||||    
T  33304975 taaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaaggtttatacatccttccaaatttagcttctcaagattcgggaac 33305074  T
Q  146 tctccaaaatctattatcttttctagctcgatggagtgacttagatcc-aatgttctcaaattgggcagatactg 219  Q
    || |||||||||| ||||||| |||| || | |||||| ||||||||| |||||| |||||||||||||||||||    
T  33305075 tccccaaaatctagtatctttactagttctaaggagtgtcttagatccaaatgtt-tcaaattgggcagatactg 33305148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 33399519 - 33399711
Alignment:
Q  47 aaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaact 146  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||  ||| |||| |||||||||||||||||||||||    
T  33399519 aaattcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggttcttacataattccaaatctaaccactcaagatttgggaact 33399618  T
Q  147 ctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactgctgtgacatgaataaacaataaa 242  Q
    ||||||||||||||||||||||||| |  || ||     ||||||||||| ||| ||||||| | |||||   ||||||||||| |||||||||||    
T  33399619 ctccaaaatctattatcttttctagatttattgaacccattagatccaattttcgcaaattgcgaagata---ctgtgacatgattaaacaataaa 33399711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 31562406 - 31562231
Alignment:
Q  44 tctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttggga 143  Q
    |||||||||||||||  ||| |||  ||||||||||||||||||||||||||| ||||| ||| ||||| |||| ||| ||| |||||||||||| ||||    
T  31562406 tctaaattcaagtaagaaagcttttctagaagtccaatagatggatccaactccacaaggtttatacattcttccaaacttagccactcaagattcggga 31562307  T
Q  144 actctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    || |||||||||||||||||||| | || |  ||||||||||||||||||||| |||| |||||||| ||||||||    
T  31562306 acgctccaaaatctattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactg 31562231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 33286011 - 33286210
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaa 119  Q
    ||||||||||| || | ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||  |  |||||||||| |    
T  33286011 atgcttacaagatttttgcaatcttttaaattcaagtaaacaaggtttcttagaagtccaatagatggatccaactccaaaaggctgatacatccttcca 33286110  T
Q  120 aatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||| |||| |   ||||||  | ||||||||||   ||||||||||| ||||||||    
T  33286111 aatttaaccactcaagattcgggaactctccgaaatctactatctttactagttttttggagtatcgtagatccaatcccctcaaattgggaagatactg 33286210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 33410455 - 33410624
Alignment:
Q  47 aaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaact 146  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| |||  ||||| ||| ||||||||| |||||||||| |||||||    
T  33410455 aaattcaagtaaacaagctttcttagaagtccaatcgatgaatccaactccacaagtttttcacatctttccaaatttaacgactcaagattcgggaact 33410554  T
Q  147 ctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||||||||  |   |||||| |||||||||||||| | |||||||||| | ||||||    
T  33410555 ctccaaaatctattatcttttctattt---tggagtcacttagatccaatgctttcaaattgggaaaatactg 33410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 33644180 - 33644010
Alignment:
Q  49 attcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaactct 148  Q
    ||||||||||||||| ||||||| |||||||||||||  ||||||||| ||||| |||   |||||||| |||||||||||||||||||| |||||||||    
T  33644180 attcaagtaaacaagctttcttaaaagtccaatagataaatccaactccacaaggtttacgcatccttccaaatttaaccactcaagattcgggaactct 33644081  T
Q  149 ccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    |||||||||||||||||||||||||   | || | ||||| ||||||| |||||| |||||| ||||||||    
T  33644080 ccaaaatctattatcttttctagctttctagaatcacttaaatccaatcttctcagattgggaagatactg 33644010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 33359215 - 33359382
Alignment:
Q  50 ttcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaactctc 149  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||| ||||| |||  ||||||||  ||||||| |   |||||||| ||||||||      
T  33359215 ttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactc-- 33359312  T
Q  150 caaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    |||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  33359313 caaaatctgttatcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactg 33359382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 9167267 - 9167390
Alignment:
Q  49 attcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaactct 148  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||  ||||||||| |||| ||||||||||||||| || ||| ||    
T  9167267 attcaagtaaacaagctttcttagaagtccaagagatggatccaactccacaagttttacacatccttccaaatctaaccactcaagattcggaaaccct 9167366  T
Q  149 ccaaaatctattatcttttctagc 172  Q
    |||||||||| ||||||| |||||    
T  9167367 ccaaaatctagtatctttactagc 9167390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 33399449 - 33399515
Alignment:
Q  49 attcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatcct 115  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  33399449 attcaagcaaacaagctttcttagaagtccaatagatggatccaactccacaagttttttacatcct 33399515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 17440438 - 17440239
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaa 119  Q
    |||||||| || |||||||||| || ||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||  ||  ||||||||| |    
T  17440438 atgcttactagattatagcaatcttttaagttcaagtaaacaagctttcttagaagtccaattgatggatccaattccacaagtctttcacatccttcca 17440339  T
Q  120 aatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||   | |||| ||||||||||||| ||||||||||||| ||||||||    
T  17440338 aatttaaccactcaagatttgggaactctccaaaatccattatcttttctagctttctagagtcacttagatccaatcttctcaaattgggaagatactg 17440239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 1118 - 1326
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaa 119  Q
    |||||||| || |||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| ||| |    
T  1118 atgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagttttatacatctttcca 1217  T
Q  120 aatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||| || |||| ||||||||||  ||||||||||||||   |||||| ||||||||||||| ||||||||||||| |||   ||    
T  1218 aatttaaccactcaagattaggaaactgtccaaaatcttctatcttttctagcttcttggagtcacttagatccaatcttctcaaattgggaaga---tg 1314  T
Q  220 ctgtgacatgaa 231  Q
    ||||||||||||    
T  1315 ctgtgacatgaa 1326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 6864 - 7072
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaa 119  Q
    |||||||| || |||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| ||| |    
T  6864 atgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttagaagtccaatagatggatccaactccacaagttttatacatctttcca 6963  T
Q  120 aatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    ||||||||||||||||||| || |||| ||||||||||  ||||||||||||||   |||||| ||||||||||||| ||||||||||||| |||   ||    
T  6964 aatttaaccactcaagattaggaaactgtccaaaatcttctatcttttctagcttcttggagtcacttagatccaatcttctcaaattgggaaga---tg 7060  T
Q  220 ctgtgacatgaa 231  Q
    ||||||||||||    
T  7061 ctgtgacatgaa 7072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 31498660 - 31498525
Alignment:
Q  20 atgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaa-ctcaacaagatttgtacatccttca 118  Q
    ||||||||||| || | ||||| || |||||||||| ||||||  ||||||||||||||||||||||||||||| | |||||| |||| ||||||||||     
T  31498660 atgcttacaagattcttgcaatcttttaaattcaaggaaacaatctttcttagaagtccaatagatggatccaaccgcaacaa-atttttacatccttcc 31498562  T
Q  119 aaatttaaccactcaagatttgggaactctccaaaat 155  Q
    | ||||||   ||||||||||||||||||||||||||    
T  31498561 agatttaagtgctcaagatttgggaactctccaaaat 31498525  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 31503743 - 31503574
Alignment:
Q  50 ttcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaactctc 149  Q
    |||||||||||||| ||| ||||||| |||||||||||||| | ||  ||||| ||| |||||||||| | || || || |||||| || ||||||||||    
T  31503743 ttcaagtaaacaagctttgttagaagaccaatagatggatctatctgcacaagttttatacatccttccagatctagccgctcaaggttcgggaactctc 31503644  T
Q  150 caaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactg 219  Q
    |||||| |   ||||||  ||  |   ||||||| |||||||||||  ||||||||||| ||||||||||    
T  31503643 caaaatgtggcatctttattaaatttttggagtggcttagatccaaatttctcaaattgcgcagatactg 31503574  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 31472096 - 31471988
Alignment:
Q  47 aaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaact 146  Q
    ||||||||||| ||||| ||| | ||||| | |||||| | ||||||||  ||||| ||| |||||||||| | || || || |||||||||||||||||    
T  31472096 aaattcaagtatacaagctttgtaagaagcctaatagacgaatccaactgcacaagttttatacatccttccagatctagccgctcaagatttgggaact 31471997  T
Q  147 ctccaaaat 155  Q
    |||||||||    
T  31471996 ctccaaaat 31471988  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 31478593 - 31478485
Alignment:
Q  47 aaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagatttgggaact 146  Q
    ||||||||||||||||| ||  ||| ||| | || ||||||||||||||  ||||| ||| |||||||||| | || || || ||||||||| |||||||    
T  31478593 aaattcaagtaaacaagcttcgttaaaagactaagagatggatccaactgcacaagttttatacatccttccagatctagccgctcaagattcgggaact 31478494  T
Q  147 ctccaaaat 155  Q
    |||||||||    
T  31478493 ctccaaaat 31478485  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 31484423 - 31484303
Alignment:
Q  38 caattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaagat 137  Q
    |||||||  ||||||||| ||||||| ||  || |||| | |||| || |||||| ||| ||||| |||  |||||||||||  ||||||| ||||||||    
T  31484423 caatttttcaaattcaagaaaacaagcttctttggaagacaaataaatagatccatctccacaagttttacacatccttcaaggtttaaccgctcaagat 31484324  T
Q  138 ttgggaactctccaaaatcta 158  Q
    |||||| ||||||||||||||    
T  31484323 ttgggacctctccaaaatcta 31484303  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 31526907 - 31527027
Alignment:
Q  37 gcaattttctaaattcaagtaaacaagatttcttagaagtccaatagatggatccaactcaacaagatttgtacatccttcaaaatttaaccactcaaga 136  Q
    ||||| ||| ||||||||||||||||| ||||||||||  | |||||||||||| | ||   |||| |||  ||||||||  | ||||| || |||||||    
T  31526907 gcaatcttccaaattcaagtaaacaagttttcttagaacactaatagatggatctatctgctcaagttttacacatcctttgagatttagccgctcaaga 31527006  T
Q  137 tttgggaactctccaaaatct 157  Q
    || |||| |||||| ||||||    
T  31527007 ttagggatctctccgaaatct 31527027  T

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