View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_low_31 (Length: 233)

Name: NF5139_1D_low_31
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_low_31
NF5139_1D_low_31
[»] chr8 (6 HSPs)
chr8 (8-233)||(1458398-1458623)
chr8 (8-233)||(2428105-2428330)
chr8 (14-47)||(5438450-5438483)
chr8 (14-47)||(15974933-15974966)
chr8 (18-47)||(29695339-29695368)
chr8 (14-47)||(40136974-40137007)
[»] chr7 (3 HSPs)
chr7 (4-48)||(46279035-46279079)
chr7 (8-47)||(22696342-22696381)
chr7 (14-46)||(25956305-25956337)
[»] chr5 (5 HSPs)
chr5 (8-48)||(19145550-19145590)
chr5 (8-47)||(5943893-5943932)
chr5 (14-47)||(15485431-15485464)
chr5 (14-46)||(31669037-31669069)
chr5 (14-46)||(32340349-32340381)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-47)||(240897-240936)
[»] chr2 (4 HSPs)
chr2 (8-47)||(43964000-43964039)
chr2 (14-47)||(6099530-6099563)
chr2 (14-47)||(13747645-13747678)
chr2 (46-106)||(1191580-1191637)
[»] chr6 (1 HSPs)
chr6 (14-47)||(6384014-6384047)
[»] chr4 (6 HSPs)
chr4 (14-47)||(5998699-5998732)
chr4 (14-47)||(21344848-21344881)
chr4 (14-47)||(37980159-37980192)
chr4 (14-47)||(38206137-38206170)
chr4 (14-47)||(56409982-56410015)
chr4 (14-46)||(31141356-31141388)
[»] chr3 (4 HSPs)
chr3 (14-47)||(35623278-35623311)
chr3 (14-47)||(42799759-42799792)
chr3 (14-46)||(18316511-18316543)
chr3 (14-46)||(53863880-53863912)
[»] chr1 (4 HSPs)
chr1 (14-47)||(37047016-37047049)
chr1 (14-47)||(38939233-38939266)
chr1 (18-47)||(41470622-41470651)
chr1 (7-47)||(9926288-9926328)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 1458398 - 1458623
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458398 gttgatttgggaccttggagtatgctcctctcaaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaat 1458497  T
Q  108 gatcccctcgcgagtggatggtagggttctctaaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458498 gatcccctcgcgagtggatggtagggttctctaaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagc 1458597  T
Q  208 cataaactaagtaacaataatgaagt 233  Q
    ||||||||||||||||||||||||||    
T  1458598 cataaactaagtaacaataatgaagt 1458623  T

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Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 2428105 - 2428330
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428105 gttgatttgggaccttggagtatgctcctctcaaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaat 2428204  T
Q  108 gatcccctcgcgagtggatggtagggttctctaaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428205 gatcccctcgcgagtggatggtagggttctctaaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagc 2428304  T
Q  208 cataaactaagtaacaataatgaagt 233  Q
    ||||||||||||||||||||||||||    
T  2428305 cataaactaagtaacaataatgaagt 2428330  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 5438483 - 5438450
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  5438483 ttgggaccttggagtgtgctcctctcaaggtctc 5438450  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 15974933 - 15974966
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||||| |||||||||||||||||||||||||||    
T  15974933 ttgggatcttggagtatgctcctctcaaggtctc 15974966  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 29695368 - 29695339
Alignment:
Q  18 gaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||||||||||||||||||    
T  29695368 gaccttggagtatgctcctctcaaggtctc 29695339  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 40137007 - 40136974
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  40137007 ttgggaccttggagtgtgctcctctcaaggtctc 40136974  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 46279035 - 46279079
Alignment:
Q  4 tggagttgatttgggaccttggagtatgctcctctcaaggtctcc 48  Q
    ||||||||| || |||||||||||| |||||||||||||||||||    
T  46279035 tggagttgactttggaccttggagtgtgctcctctcaaggtctcc 46279079  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 22696342 - 22696381
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  22696342 gttgatttgggatcttggagtgtgctcctctcaaggtctc 22696381  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 25956337 - 25956305
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  25956337 ttgggaccttggagtgtgctcctctcaaggtct 25956305  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 19145590 - 19145550
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctcc 48  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  19145590 gttgacttgggatcttggagtatgctcctctcaaggtctcc 19145550  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 5943932 - 5943893
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  5943932 gttgacttgggaccttggagtgtgctcctctcaaggtctc 5943893  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 15485464 - 15485431
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  15485464 ttgggaccttggagtgtgctcctctcaaggtctc 15485431  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 31669069 - 31669037
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  31669069 ttgggaccttggagtctgctcctctcaaggtct 31669037  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 32340381 - 32340349
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  32340381 ttgggaccttggagtgtgctcctctcaaggtct 32340349  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 240936 - 240897
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  240936 gttggtttgggatcttggagtatgctcctctcaaggtctc 240897  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 43964039 - 43964000
Alignment:
Q  8 gttgatttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  43964039 gttggtttgggaccttggagtgtgctcctctcaaggtctc 43964000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 6099563 - 6099530
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  6099563 ttgggaccttggagtgtgctcctctcaaggtctc 6099530  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 13747678 - 13747645
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||||||||||||||||||||||| |||||||||    
T  13747678 ttgggaccttggagtatgctcctcccaaggtctc 13747645  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 1191580 - 1191637
Alignment:
Q  46 tccctctagtaccaatttcgttgggct-agtccataccgagtcttcttgctctggctttaaa 106  Q
    |||||||||||||||||||| |||||| ||||||||| ||||    ||||||||||||||||    
T  1191580 tccctctagtaccaatttcggtgggctaagtccatacagagt----ttgctctggctttaaa 1191637  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 6384047 - 6384014
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  6384047 ttgggaccttggagtgtgctcctctcaaggtctc 6384014  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 5998732 - 5998699
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  5998732 ttgggaccttggagtgtgctcctctcaaggtctc 5998699  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 21344848 - 21344881
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  21344848 ttgggaccttggagtgtgctcctctcaaggtctc 21344881  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 37980192 - 37980159
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  37980192 ttgggaccttggagtgtgctcctctcaaggtctc 37980159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 38206170 - 38206137
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  38206170 ttgggaccttggagtgtgctcctctcaaggtctc 38206137  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 56409982 - 56410015
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  56409982 ttgggaccttggagtgtgctcctctcaaggtctc 56410015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 31141388 - 31141356
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  31141388 ttgggaccttggagtgtgctcctctcaaggtct 31141356  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 35623311 - 35623278
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  35623311 ttgggaccttggagtgtgctcctctcaaggtctc 35623278  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 42799792 - 42799759
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  42799792 ttgggaccttggagtgtgctcctctcaaggtctc 42799759  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 18316543 - 18316511
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  18316543 ttgggaccttggagtgtgctcctctcaaggtct 18316511  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 53863912 - 53863880
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtct 46  Q
    ||||||||||||||| |||||||||||||||||    
T  53863912 ttgggaccttggagtgtgctcctctcaaggtct 53863880  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 37047016 - 37047049
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  37047016 ttgggaccttggagtgtgctcctctcaaggtctc 37047049  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 38939233 - 38939266
Alignment:
Q  14 ttgggaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||| ||||||||||||||||||    
T  38939233 ttgggaccttggagtgtgctcctctcaaggtctc 38939266  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 41470651 - 41470622
Alignment:
Q  18 gaccttggagtatgctcctctcaaggtctc 47  Q
    ||||||||||||||||||||||||||||||    
T  41470651 gaccttggagtatgctcctctcaaggtctc 41470622  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9926328 - 9926288
Alignment:
Q  7 agttgatttgggaccttggagtatgctcctctcaaggtctc 47  Q
    |||||| |||||| |||||||| ||||||||||||||||||    
T  9926328 agttgacttgggatcttggagtgtgctcctctcaaggtctc 9926288  T

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