View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_34 (Length: 219)
Name: NF5139_1D_low_34
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7744752 - 7744955
Alignment:
| Q |
1 |
aataaaagaaagaagcaactcttaaaaatcaagagaaatcatgattttgtgatgaaaagacaaataattttcagagaaggaaagcacaaatgctcaaaga |
100 |
Q |
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| T |
7744752 |
aataaaagaaagaagcaactcttaaaaatcaagagaaatcatgattttgtgatgaaaagacaaataattttcagagaaggaaagcacaaatgctcaaaga |
7744851 |
T |
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| Q |
101 |
tatgtattcatatataatgtacaaagaatatttcacatgaaagtactcgaatgttaaaacataaaacagaacaagtgcatagcagaaaaactttatgcct |
200 |
Q |
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| T |
7744852 |
tatgtattcatatataatgtacaaagaatatttcacatgaaagtactcgaatgttaaaacataaaacagaacaagtgcatagcagaaaaactttatgcct |
7744951 |
T |
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| Q |
201 |
taaa |
204 |
Q |
| |
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|||| |
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| T |
7744952 |
taaa |
7744955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 6800450 - 6800417
Alignment:
| Q |
160 |
cataaaacagaacaagtgcatagcagaaaaactt |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6800450 |
cataaaacagaacaagtgcatagcagaaaaactt |
6800417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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