View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_36 (Length: 212)
Name: NF5139_1D_low_36
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35071963 - 35072154
Alignment:
| Q |
1 |
agtaaaacccctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctctatgctcctctctcctgttatctgaagc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35071963 |
agtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagc |
35072062 |
T |
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| Q |
101 |
actcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcca |
192 |
Q |
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| T |
35072063 |
actcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcca |
35072154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 35072812 - 35072994
Alignment:
| Q |
10 |
cctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctctatgctcctctctcctgttatctgaagcactcttcca |
109 |
Q |
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| T |
35072812 |
cctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaaccctatca |
35072911 |
T |
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| Q |
110 |
tcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcca |
192 |
Q |
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| T |
35072912 |
tcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcca |
35072994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 35107048 - 35106866
Alignment:
| Q |
10 |
cctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctctatgctcctctctcctgttatctgaagcactcttcca |
109 |
Q |
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| T |
35107048 |
cctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaaccctatca |
35106949 |
T |
|
| Q |
110 |
tcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcca |
192 |
Q |
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| T |
35106948 |
tcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcca |
35106866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 24040868 - 24041050
Alignment:
| Q |
10 |
cctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctctatgctcctctctcctgttatctgaagcactcttcca |
109 |
Q |
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|||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || || || |
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| T |
24040868 |
cctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatca |
24040967 |
T |
|
| Q |
110 |
tcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcca |
192 |
Q |
| |
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||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || |||||||| |
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| T |
24040968 |
tcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttcca |
24041050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 24014379 - 24014493
Alignment:
| Q |
78 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
177 |
Q |
| |
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|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
178 |
tggagtttccttcca |
192 |
Q |
| |
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||| || |||||||| |
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| T |
24014479 |
tggggtctccttcca |
24014493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
108 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
189 |
Q |
| |
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||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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