View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_40 (Length: 208)
Name: NF5139_1D_low_40
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 31608522 - 31608605
Alignment:
| Q |
51 |
aagcataacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactagat |
137 |
Q |
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| T |
31608522 |
aagcataacttctagctaggaacaaac---taataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactagat |
31608605 |
T |
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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 39314348 - 39314404
Alignment:
| Q |
146 |
ctctttcttctctaatctttctctctttcaatttaactcacgcagaaaaatcataac |
202 |
Q |
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| T |
39314348 |
ctctttcttctctaatctttctctctttcaatttaactcacgcagaaaaatcataac |
39314404 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 27355723 - 27355640
Alignment:
| Q |
56 |
taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactagatta |
139 |
Q |
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| T |
27355723 |
taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagatta |
27355640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 45411437 - 45411520
Alignment:
| Q |
56 |
taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactagatta |
139 |
Q |
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| T |
45411437 |
taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagatta |
45411520 |
T |
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