View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_1D_low_41 (Length: 207)

Name: NF5139_1D_low_41
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_1D_low_41
NF5139_1D_low_41
[»] chr6 (12 HSPs)
chr6 (88-202)||(33263563-33263677)
chr6 (88-182)||(33286491-33286591)
chr6 (119-182)||(33388987-33389050)
chr6 (88-182)||(33359655-33359752)
chr6 (89-182)||(33272745-33272841)
chr6 (135-182)||(9167706-9167753)
chr6 (122-181)||(33058513-33058572)
chr6 (123-182)||(33401566-33401625)
chr6 (135-181)||(33410916-33410962)
chr6 (145-182)||(31561898-31561935)
chr6 (137-180)||(33643701-33643744)
chr6 (139-189)||(33305422-33305472)
[»] chr2 (1 HSPs)
chr2 (88-181)||(17439864-17439960)
[»] scaffold1408 (1 HSPs)
scaffold1408 (145-184)||(1596-1635)
[»] scaffold0428 (1 HSPs)
scaffold0428 (145-184)||(7342-7381)
[»] chr4 (1 HSPs)
chr4 (140-185)||(31478075-31478120)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 33263677 - 33263563
Alignment:
Q  88 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33263677 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatcttagattgctcatcatcaggtac 33263578  T
Q  188 ggaatgtatatctca 202  Q
    |||||||||||||||    
T  33263577 ggaatgtatatctca 33263563  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 33286591 - 33286491
Alignment:
Q  88 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtgg------acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 181  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||| |      | |||||||||||||||||||||||||||||||||||||||||||||    
T  33286591 ttaggaaaagcatgttaaagccttagttttgaatgatgaagaggttggattgaatgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 33286492  T
Q  182 a 182  Q
    |    
T  33286491 a 33286491  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 33389050 - 33388987
Alignment:
Q  119 gatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  33389050 gatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagattactcatcatca 33388987  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 33359752 - 33359655
Alignment:
Q  88 ttaggaaaagcaagttaaagccatagttttggatgatgaaga---ggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    ||||||||| || ||| ||||||||||||||  | ||||| |   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  33359752 ttaggaaaaacatgttgaagccatagttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatcttagagtgctcatcatca 33359655  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 33272841 - 33272745
Alignment:
Q  89 taggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    ||||||||||| ||| |||||||||   |||||| | ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  33272841 taggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcataatca 33272745  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 9167753 - 9167706
Alignment:
Q  135 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9167753 acgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatca 9167706  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 33058572 - 33058513
Alignment:
Q  122 gatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 181  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  33058572 gatgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagattgctcttcatc 33058513  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 33401625 - 33401566
Alignment:
Q  123 atgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  33401625 atgaagaggtggatgttgaacacttatcaaaaatgagtaatcttagacttctcatcatca 33401566  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 33410962 - 33410916
Alignment:
Q  135 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 181  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33410962 acgttgaacacttttcaaaaatgagtaatcttagattgctcatcatc 33410916  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
Q  145 cttgtcaaaaatgagtaatcttagattgctcatcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcatca 31561935  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 33643701 - 33643744
Alignment:
Q  137 gttgaacacttgtcaaaaatgagtaatcttagattgctcatcat 180  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  33643701 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcat 33643744  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 33305472 - 33305422
Alignment:
Q  139 tgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacgg 189  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||||||    
T  33305472 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacgg 33305422  T

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Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 17439864 - 17439960
Alignment:
Q  88 ttaggaaaagcaagttaaagccatagttttggatgat---gaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 181  Q
    |||||||||||| ||| |||||||||||||| |  ||   ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  17439864 ttaggaaaagcatgttgaagccatagttttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagattgctcatcatc 17439960  T

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Target: scaffold1408 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 1635 - 1596
Alignment:
Q  145 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 184  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  1635 cttgtcaacaatgagtaatcttagattgctaatcatcagg 1596  T

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Target: scaffold0428 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 7381 - 7342
Alignment:
Q  145 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 184  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  7381 cttgtcaacaatgagtaatcttagattgctaatcatcagg 7342  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 31478075 - 31478120
Alignment:
Q  140 gaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggt 185  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||    
T  31478075 gaacacttgtctaaaatgagacatcttagattgctcatcgtcaggt 31478120  T

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