View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_1D_low_9 (Length: 376)
Name: NF5139_1D_low_9
Description: NF5139_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_1D_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 6916378 - 6916150
Alignment:
| Q |
15 |
atgtcataattggttaggtttgagtacattgttagctcaagaccctaagttaatgtgaaaacaggnnnnnnnttatttgatgggttgtagggtgatgatt |
114 |
Q |
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| T |
6916378 |
atgtcataattagttagctttgagtatattgttagctcaagatcctaagttaatgtgaaaacaggaaaaaa-ttatttgatgggttgtagggtgatgatt |
6916280 |
T |
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| Q |
115 |
ttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacagatggtgtgacatgtgaatgtagaaatga |
214 |
Q |
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| T |
6916279 |
ttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacagatggtgtgacatgtgaatgtagaaatga |
6916180 |
T |
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| Q |
215 |
aacacaaagatatgaactaaaagaatacggtt |
246 |
Q |
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| T |
6916179 |
aacac--agatatgaactcaaagaatacggtt |
6916150 |
T |
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