View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_high_1 (Length: 817)
Name: NF5139_2D_high_1
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 312 - 799
Target Start/End: Complemental strand, 52583443 - 52582956
Alignment:
| Q |
312 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
52583344 |
T |
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| Q |
412 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaact |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583343 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaact |
52583244 |
T |
|
| Q |
512 |
gtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttgga |
611 |
Q |
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| T |
52583243 |
gtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttgga |
52583144 |
T |
|
| Q |
612 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatc |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583143 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatc |
52583044 |
T |
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| Q |
712 |
cgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtcttattaatgaaatgctaatttgatgtctgattt |
799 |
Q |
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| T |
52583043 |
cgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtcttattaatgaaatgctaatttgatgtctgattt |
52582956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 42 - 305
Target Start/End: Complemental strand, 52583930 - 52583650
Alignment:
| Q |
42 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttc-----ctgattttatgttcactagtactaataaagaaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52583930 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaa |
52583831 |
T |
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| Q |
137 |
attgcatcatacttgagtagtattcgaat------------taagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
224 |
Q |
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| T |
52583830 |
attgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
52583731 |
T |
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| Q |
225 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
305 |
Q |
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| T |
52583730 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
214 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
278 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
179 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
221 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
179 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
221 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 43242935 - 43242984
Alignment:
| Q |
648 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttga |
697 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttga |
43242984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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