View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_2D_high_10 (Length: 323)

Name: NF5139_2D_high_10
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_2D_high_10
NF5139_2D_high_10
[»] chr1 (4 HSPs)
chr1 (19-323)||(34989638-34989942)
chr1 (19-320)||(2305226-2305527)
chr1 (19-145)||(34975970-34976096)
chr1 (19-145)||(34983081-34983207)
[»] chr3 (22 HSPs)
chr3 (25-322)||(22656813-22657110)
chr3 (64-320)||(22620700-22620956)
chr3 (46-320)||(22647952-22648226)
chr3 (56-318)||(22034943-22035205)
chr3 (72-318)||(22115511-22115757)
chr3 (117-318)||(22615110-22615308)
chr3 (56-308)||(22187424-22187676)
chr3 (56-318)||(21930847-21931109)
chr3 (56-318)||(30989083-30989345)
chr3 (56-308)||(22028436-22028688)
chr3 (72-318)||(21937579-21937825)
chr3 (139-318)||(22357866-22358042)
chr3 (56-247)||(22105205-22105396)
chr3 (113-251)||(22179910-22180048)
chr3 (117-315)||(22436476-22436671)
chr3 (56-276)||(21946092-21946312)
chr3 (238-318)||(22431133-22431213)
chr3 (37-81)||(22628294-22628338)
chr3 (235-318)||(22367884-22367967)
chr3 (115-152)||(22208618-22208655)
chr3 (237-281)||(18966946-18966990)
chr3 (90-272)||(22442560-22442739)
[»] scaffold1439 (1 HSPs)
scaffold1439 (139-322)||(1454-1637)
[»] chr5 (2 HSPs)
chr5 (19-164)||(40580513-40580658)
chr5 (220-322)||(40580410-40580512)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 34989942 - 34989638
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  34989942 aaaatcttttttattctggtcaaatgggaatcattccttagctctacagtcatattttcactaaatctctgccattcaaatgcatttctcccctttgtag 34989843  T
Q  119 ataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34989842 ataaaagaccaccaatagtcacaattgctagtggtaagcccttgcacttcctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttc 34989743  T
Q  219 caagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  34989742 caagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaatggttgtagttcatgcacttcaataaatgaagatttcttacaa 34989643  T
Q  319 tacat 323  Q
    |||||    
T  34989642 tacat 34989638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 2305226 - 2305527
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtag 118  Q
    |||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  2305226 aaaatcttttttatcccggtcaaatgggaatcattctttaactctaaagtcatattttcactaaatctctgccattcaaatgcatttttctcctttgtag 2305325  T
Q  119 ataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttc 218  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2305326 ataaaagaccaccaatagttacaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatccttc 2305425  T
Q  219 caagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
     |||||||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  2305426 aaagtcaaattgaaatgccttcttattaaacaaatcaaattatttttcctcagttaaaagttgtagttcatgcacttgaataaaagaagatttcttacaa 2305525  T
Q  319 ta 320  Q
    ||    
T  2305526 ta 2305527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 34976096 - 34975970
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtag 118  Q
    |||||||||||||| | ||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  34976096 aaaatcttttttatcccggtcaaatgagaatcattctttagctcaaaagtcatattttcactaaatctctgtcattcaaatacatttttctcctttgtag 34975997  T
Q  119 ataaaagaccaccaatagtcacaattg 145  Q
    |||||||||| |||||||| |||||||    
T  34975996 ataaaagacccccaatagttacaattg 34975970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 34983207 - 34983081
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtag 118  Q
    |||||||||||||| | ||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  34983207 aaaatcttttttatcccggtcaaatgagaatcattctttagctcaaaagtcatattttcactaaatctctgtcattcaaatacatttttctcctttgtag 34983108  T
Q  119 ataaaagaccaccaatagtcacaattg 145  Q
    |||||||||| |||||||| |||||||    
T  34983107 ataaaagacccccaatagttacaattg 34983081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 322
Target Start/End: Original strand, 22656813 - 22657110
Alignment:
Q  25 ttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaa 124  Q
    |||||||| | ||| ||||||||||||||  ||| ||||||||| ||||||||| || |||| |||||||||||||||||| ||||||||||||||||||    
T  22656813 ttttttatcccggttaaatgggaatcattatttaactctaaagttatattttcattaaatctttgccattcaaatgcatttttctcctttgtagataaaa 22656912  T
Q  125 gaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtc 224  Q
    | || ||||||| ||||||||| || ||||| || ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||| |  |||||    
T  22656913 ggccgccaatagccacaattgccagcggtaaacctttgcattttctagcaatttcggaagatatatcaatgagctcttttggacaacatccattaaagtc 22657012  T
Q  225 aaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaataca 322  Q
    ||||||||| ||||||||||| ||||| ||||  ||||||||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22657013 aaattgaaaggccttcttattaaacaactcaaaagattgttctactgttaaaggatgtagttcatgcacttcaataaaagaagatttcttacaataca 22657110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 64 - 320
Target Start/End: Original strand, 22620700 - 22620956
Alignment:
Q  64 aaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaagcccttgc 163  Q
    ||||||||||||||| || ||||| |||| |||||||||||| ||  |||||||||||||||||||||||  |  ||||||||||||||||| |||||||    
T  22620700 aaagtcatattttcattaaatctccgccaatcaaatgcatttttcaactttgtagataaaagaccaccaacggctacaattgctagtggtaaacccttgc 22620799  T
Q  164 actttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattg 263  Q
    | ||||||||||||||  ||| ||||||||| || ||||||||||||| ||| || ||||||||| ||||| |||||||||||||||| ||||  |||||    
T  22620800 attttctagcaatttcggaagatatatcaattagatcttttggacaacttccatcaaagtcaaatcgaaataccttcttattgaacaactcaaaagattg 22620899  T
Q  264 ttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 320  Q
    ||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  22620900 ttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttacaata 22620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 46 - 320
Target Start/End: Original strand, 22647952 - 22648226
Alignment:
Q  46 gaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattg 145  Q
    ||||| ||| ||||||||||||||||||||| || | || ||||||| |||||| ||||| |||| |||||||| || ||||||||||| |  |||||||    
T  22647952 gaatctttctttagctctaaagtcatatttttacaaaatttctgccactcaaatacatttttctcttttgtagacaatagaccaccaatggcaacaattg 22648051  T
Q  146 ctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttatt 245  Q
    | || ||||| |||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||| |    |||||| ||||||| |||||| ||    
T  22648052 ccagcggtaaacccttgcattttctagaaatttcaaaagatatatcaatgagttcttttggacaacatccattgttgtcaaactgaaatgtcttcttgtt 22648151  T
Q  246 gaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 320  Q
    |||||| ||||  |||||||| |  ||||||||||| | ||||| ||||||||| || |||||||||||||||||    
T  22648152 gaacaactcaaaagattgttcatttgttaaaggttgcaattcatacacttcaatgaaagaagatttcttacaata 22648226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 318
Target Start/End: Complemental strand, 22035205 - 22034943
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    ||||||||||| | | |||||| ||| |||||||||| |||||  ||||| ||||  ||||||||||||| ||||||||||  |||||||||||||| ||    
T  22035205 ttagctctaaatttaaattttctctaaatctctgccactcaaacacatttttctctcttgtagataaaagtccaccaatagcaacaattgctagtggcaa 22035106  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     ||||| |||||| || ||||||||  ||||||| ||||||||||||| |||||| | ||| |  |||||||||  |||||||||||||||||||| |      
T  22035105 accctttcactttttaacaatttcattagctataccaatgagctctttgggacaagaccctccgtagtcaaatttgaatgccttcttattgaacaacttc 22035006  T
Q  256 attgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    | ||||||||||| |||||||||||| || ||| |||| ||||| || |||||||| ||||||    
T  22035005 aatgattgttcttgagttaaaggttgcagctcaagcacctcaatgaaagaagattttttacaa 22034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 318
Target Start/End: Complemental strand, 22115757 - 22115511
Alignment:
Q  72 attttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttcta 171  Q
    |||||| ||| |||||||||| |||||  ||||| ||||  ||||||||||||| ||||| || |  ||||||||||| ||||| |||||||| ||| ||    
T  22115757 attttctctaaatctctgccactcaaacacatttttctctcttgtagataaaagtccaccgatggcaacaattgctagcggtaaacccttgcatttttta 22115658  T
Q  172 gcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcag 271  Q
     ||||||||  ||||||| ||||||||||||| |||||| | ||| |  |||||||||  |||||||||||||||||||| |  | ||||||||||| ||    
T  22115657 acaatttcattagctataccaatgagctctttgggacaagaccctccgtagtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgag 22115558  T
Q  272 ttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    |||||||||| || | | |||| ||||| || |||||||| ||||||    
T  22115557 ttaaaggttgcagctaaagcacctcaatgaaagaagattttttacaa 22115511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 22615110 - 22615308
Alignment:
Q  117 agataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcct 216  Q
    |||||||||||| || || |  ||||||||||||||||| || ||||| ||| || |||| ||| ||| ||||||||||||||||||||||||||| | |    
T  22615110 agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat 22615209  T
Q  217 tccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttac 316  Q
    |    |||||||||||||||||||||||| ||||| || |  ||||||||||||||||||||||| |  ||||||||||  |  ||||||||| ||||||    
T  22615210 tt---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgactaacgaagatctcttac 22615306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 308
Target Start/End: Complemental strand, 22187676 - 22187424
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    |||||||| || ||| || ||| ||| |||||||||| |||||  ||||| ||||  ||||||||||||| ||||| || |  ||||||||||| |||||    
T  22187676 ttagctctgaattcagatgttctctaaatctctgccactcaaacacatttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaa 22187577  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     ||  |||| ||| || ||||||||  ||||||| |||||||||| ||||||||||| || ||  | |||| ||  |||||||||||||||||||| ||     
T  22187576 accactgcattttttaacaatttcatcagctataccaatgagctcgtttggacaacacccatcacaatcaattttgaatgccttcttattgaacaactcc 22187477  T
Q  256 attgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaaga 308  Q
    |  |||||||||  || ||||||||| ||||||||||| |||||||| |||||    
T  22187476 aaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaaga 22187424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 56 - 318
Target Start/End: Complemental strand, 21931109 - 21930847
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    ||||||||||| | | |||||| ||| ||| |||||| |||||  ||||| ||||  ||||||||||||| ||||| || |  ||||||||||| |||||    
T  21931109 ttagctctaaatttagattttctctaaatcgctgccactcaaacacatttttctctcttgtagataaaagtccaccgatggcaacaattgctagcggtaa 21931010  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     || ||||| ||| || ||||||||  || | || ||||||||||| |||||||||| || ||  |||||||||  |||||||||||||||||||| ||     
T  21931009 accattgcattttttaacaatttcattagttgtaccaatgagctctgttggacaacacccatcatagtcaaatttgaatgccttcttattgaacaactcc 21930910  T
Q  256 attgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    |  |||||||| | |||||||||||| |  ||| ||| |||||| || |||||||| ||||||    
T  21930909 aaagattgttcatgagttaaaggttgcaactcaagcatttcaatgaaagaagattttttacaa 21930847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 318
Target Start/End: Original strand, 30989083 - 30989345
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    ||||||||||| | | ||| |||||| |||| ||||| |||||  ||||| |||| |||| ||| ||||| || ||||| |  ||||||||||| |||||    
T  30989083 ttagctctaaacttagattctcactaaatctttgccactcaaacacatttttctcttttgcagacaaaagtcctccaatggcaacaattgctagcggtaa 30989182  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     || || || ||| || |||||||| |||||||| |||||||||| ||||||||||| ||  |   |||||||   |||||||||||||||||||| ||     
T  30989183 accgttacattttttaacaatttcataagctataccaatgagctcctttggacaacaaccaccatggtcaaatctgaatgccttcttattgaacaactcc 30989282  T
Q  256 attgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    |  ||||||| |||| |||||||||| |  ||| ||||||||||| | |||||||| ||||||    
T  30989283 aaagattgttgttcatttaaaggttgcaactcaagcacttcaatataagaagattttttacaa 30989345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 308
Target Start/End: Complemental strand, 22028688 - 22028436
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    |||||||| || ||| || ||| ||| || ||||||| |||||  ||||| ||||  ||||||||||||| ||||| || |  ||||||||||| |||||    
T  22028688 ttagctctgaattcagatgttctctaaatatctgccactcaaacacatttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaa 22028589  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     ||  |||| ||| || ||||||||  ||||||| |||||||||| ||||||||||| || ||  | |||| ||  ||||  |||||||||||||| ||     
T  22028588 accactgcattttttaacaatttcatcagctataccaatgagctcgtttggacaacacccatcacaatcaattttgaatgaattcttattgaacaactcc 22028489  T
Q  256 attgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaaga 308  Q
    |  |||||||||  || ||||||||| ||||||||||| |||||||| |||||    
T  22028488 aaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaaga 22028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 318
Target Start/End: Complemental strand, 21937825 - 21937579
Alignment:
Q  72 attttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttcta 171  Q
    |||||| ||| |||||| ||| |||||  ||||| ||||  ||||||||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| |     
T  21937825 attttctctaaatctcttccactcaaacacatttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaaaccattgcattttttt 21937726  T
Q  172 gcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcag 271  Q
     ||||||||  || |||| || | ||||||||||||||||| || ||  |||||||||  |||||||||||||||||||| || |  |||||||| | ||    
T  21937725 acaatttcattagatataccatttagctcttttggacaacacccatcatagtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgag 21937626  T
Q  272 ttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    |||||  ||| |  ||| | |||||||| || |||||||| ||||||    
T  21937625 ttaaacattgcaactcaagaacttcaatgaaagaagattttttacaa 21937579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 318
Target Start/End: Original strand, 22357866 - 22358042
Alignment:
Q  139 acaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 238  Q
    ||||||||||||||||| || ||||| ||| || ||||||   ||| ||||||||| || | || |||||||| ||| |  ||||||   || |||||||    
T  22357866 acaattgctagtggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacgtccatttaagtca---tggaatgcct 22357962  T
Q  239 tcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    ||||||||||||| ||||  ||||||||| |||| |||  || |||||||| |||||||| ||| |||||||||||||||    
T  22357963 tcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaacaaaagaagatttcttacaa 22358042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 22105396 - 22105205
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    |||||||| || ||| || ||| ||| |||||||||| |||||  || |  ||||  ||||||||||||| ||||| || |  ||||||||||| |||||    
T  22105396 ttagctctgaattcagatgttctctaaatctctgccactcaaacacactattctctattgtagataaaaggccacctatggcaacaattgctagcggtaa 22105297  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattga 247  Q
     || ||||| ||| || |||| |||  ||||||| |||||||||||||||||||||| || ||  | |||||||  ||| ||||||||||||    
T  22105296 accattgcattttttaacaatgtcattagctataccaatgagctcttttggacaacacccatcacaatcaaatttgaataccttcttattga 22105205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 22180048 - 22179910
Alignment:
Q  113 ttgtagataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaaca 212  Q
    ||||||||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| || ||||||||  ||||||| |||||| ||||||| || ||||    
T  22180048 ttgtagataaaagtccaccgatggcaacaattgctagcggtaaaccattgcattttttaacaatttcattagctataccaatgacctctttttgaaaaca 22179949  T
Q  213 tccttccaagtcaaattgaaatgccttcttattgaacaa 251  Q
     || ||   ||||||||  ||||||||||||||||||||    
T  22179948 cccgtcattgtcaaatttgaatgccttcttattgaacaa 22179910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 315
Target Start/End: Original strand, 22436476 - 22436671
Alignment:
Q  117 agataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcct 216  Q
    |||||||||||||||| |    ||||||||||| ||||| || ||||| ||| || ||||||   ||| ||||||||| || | || ||||||||||||     
T  22436476 agataaaagaccaccagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttgtggacaacatcca 22436575  T
Q  217 tccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttctta 315  Q
      ||||| |   || |||||||||||||||||||| || |  |||| |||||||||||||  ||| |||||||| ||||||| ||| |||||| |||||    
T  22436576 ctcaagtta---tggaatgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaagaagatctctta 22436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 21946312 - 21946092
Alignment:
Q  56 ttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaa 155  Q
    ||||||||||| | | |||||| ||| |||||||||| ||| |   |||| ||||  | ||||||||||| ||||| ||||   |||||||||  |||||    
T  21946312 ttagctctaaatttagattttctctaaatctctgccactcagacaaatttttctctctcgtagataaaaggccaccgatagcagcaattgctaacggtaa 21946213  T
Q  156 gcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatca 255  Q
     || || || ||| |  ||||||||  ||||||| |||| ||||| |||||| |||| ||  |  ||||||||| ||||||||||||||| ||||| ||     
T  21946212 accattccatttttttacaatttcattagctataccaattagctcatttggataacacccaccatagtcaaatttaaatgccttcttattaaacaactcc 21946113  T
Q  256 attgattgttcttcagttaaa 276  Q
    |  |||||||||| |||||||    
T  21946112 aaagattgttcttgagttaaa 21946092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 22431133 - 22431213
Alignment:
Q  238 ttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    |||||||||||||| || |  |||| |||||| ||||||  ||  |||||||||||||||| ||| |||||||||||||||    
T  22431133 ttcttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaa 22431213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 22628294 - 22628338
Alignment:
Q  37 gtcaaatgggaatcattccttagctctaaagtcatattttcacta 81  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||    
T  22628294 gtcaaatgggaatccttgtttagctctaaagtcatattttcacta 22628338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 22367884 - 22367967
Alignment:
Q  235 gccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 318  Q
    ||||||||||||||||| || |  |||| ||||||| |||||  ||  |||| ||||||||||| ||| |||||||||||||||    
T  22367884 gccttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaacaaaagaagatttcttacaa 22367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 22208655 - 22208618
Alignment:
Q  115 gtagataaaagaccaccaatagtcacaattgctagtgg 152  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  22208655 gtagataaaagaccaccaatagccacaattgcaagtgg 22208618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 18966946 - 18966990
Alignment:
Q  237 cttcttattgaacaaatcaattgattgttcttcagttaaaggttg 281  Q
    ||||||||||||||| || || ||||||||||| |||||||||||    
T  18966946 cttcttattgaacaactctatagattgttcttcggttaaaggttg 18966990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 22442560 - 22442739
Alignment:
Q  90 ccattcaaatgcatttctctcctttgtagataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctata 189  Q
    |||||||| || |||||| || || | || ||||| |||||||||    ||||||||||||||||| || ||||| |||  | ||||||   ||| ||||    
T  22442560 ccattcaattgtatttctatctttgggagctaaaataccaccaatgactacaattgctagtggtaatccattgcatttttcaacaattttggaagatata 22442659  T
Q  190 tcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagt 272  Q
     |||| || | ||||||||||| ||| |  ||||||   ||||||||||||||||||||||| || |  ||||||||| ||||    
T  22442660 ccaataagattttttggacaacgtccgtttaagtca---tgaaatgccttcttattgaacaactccaaagattgttctacagt 22442739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 322
Target Start/End: Original strand, 1454 - 1637
Alignment:
Q  139 acaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 238  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1454 acaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 1553  T
Q  239 tcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaataca 322  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1554 tcttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttcttacaataca 1637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 40580658 - 40580513
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatcattccttagctctaaagtcatattttcactacatctctgccattcaaatgcatttctctcctttgtag 118  Q
    |||||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40580658 aaaatcttttttatcccgatcaaatcggaatcattccttagctctaaagtcatattttcactaaatctctgccattcaaatgcatttctctcctttgtag 40580559  T
Q  119 ataaaagaccaccaatagtcacaattgctagtggtaagcccttgca 164  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  40580558 ataaaagaccaccaatagtaacaattgctagtggtaagcccttgca 40580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 40580512 - 40580410
Alignment:
Q  220 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 319  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  40580512 aagtcaaattgaaatgccttcttgttgaacaaatcaaatgatttttcttctgttaaaggttgtagttcatgcacttcaataaaagaaaatttcttacaat 40580413  T
Q  320 aca 322  Q
    |||    
T  40580412 aca 40580410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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