View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_high_12 (Length: 275)
Name: NF5139_2D_high_12
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 35335151 - 35335404
Alignment:
| Q |
1 |
caggggcaagagcaggagtgtgatgatggtgggggtgagggttgggagttggagatttagtaggtacatgggcgtggaatggagggtgaattggaatgtg |
100 |
Q |
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| T |
35335151 |
caggggcaagagcaggagtgtgatgatggcgggggtgagggttgggagttggagatttagtaggtacatgggcgtggaatggagggtgaattggaatgtg |
35335250 |
T |
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| Q |
101 |
tttgtgagcaggggcgtgagcaggagggtggggatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggtttt |
200 |
Q |
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| T |
35335251 |
tttgtgagcaggggcgtgagcaggagggtggtgatgtgttggtggttgaataggcgcatgagttagagggcgttgatggttgtgatgagttggaggtttt |
35335350 |
T |
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| Q |
201 |
gcatggcgaggaggatgtactggaacatgtttgtgaacaggggcatgagcagga |
254 |
Q |
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| T |
35335351 |
gcatggcgaggaggatgtactggaacatgtttgtgaacaggggcatgagcagga |
35335404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 35335492 - 35335668
Alignment:
| Q |
81 |
ggagggtgaattggaatgtgtttgtgagcaggggcgtgagcaggagggtg---gggatgtgttggtggttgaataggggcatgagttagagggcgttgat |
177 |
Q |
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| T |
35335492 |
ggaggatgaactggaacatgtttgtgaataggagcatgagcaggagagtgatggcgatgtgttggaggttgaataggggaatgagcaggagtgtgttgat |
35335591 |
T |
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| Q |
178 |
ggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaacatgtttgtgaacaggggcatgagcagga |
254 |
Q |
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| T |
35335592 |
gacggtgatgggttggaggtttagcatggtgaggaggatgaactggaacatgtttgtgaacaggggcatgagcagga |
35335668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 35335378 - 35335536
Alignment:
| Q |
99 |
tgtttgtgagcaggggcgtgagcaggagg---gtggggatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggag |
195 |
Q |
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| T |
35335378 |
tgtttgtgaacaggggcatgagcaggaggctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttggag |
35335477 |
T |
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| Q |
196 |
gttttgcatggcgaggaggatgtactggaacatgtttgtgaacaggggcatgagcagga |
254 |
Q |
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| T |
35335478 |
gtttagcatgatgaggaggatgaactggaacatgtttgtgaataggagcatgagcagga |
35335536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 16592096 - 16592030
Alignment:
| Q |
133 |
gatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggttt |
199 |
Q |
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| T |
16592096 |
gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtggtgatgggttggaggttt |
16592030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 16602546 - 16602460
Alignment:
| Q |
133 |
gatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgta |
219 |
Q |
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| T |
16602546 |
gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgagaagggtgta |
16602460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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