View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_high_7 (Length: 366)
Name: NF5139_2D_high_7
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 42305646 - 42305304
Alignment:
| Q |
1 |
ttcaatggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagcttnnnnnnncattccttctaatttata |
100 |
Q |
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| T |
42305646 |
ttcaatggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagctcaaaaaaacattccttctaatttata |
42305547 |
T |
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| Q |
101 |
tataattaatttggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttaccaactaatg |
200 |
Q |
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| T |
42305546 |
tataattaatatggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttaccgactaatg |
42305447 |
T |
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| Q |
201 |
ctgtttctatcacatccacatgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaattttaattcccagattgtaatc |
300 |
Q |
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| T |
42305446 |
ctgcttctaccacatcgacatgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaattttaattcccagattgtaatc |
42305347 |
T |
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| Q |
301 |
tttataaaatgaaggaggctaaattggttgaatctccgtctta |
343 |
Q |
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| T |
42305346 |
tttataaaatgaaggaggctaaattggttgattctccgtctta |
42305304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 32356527 - 32356468
Alignment:
| Q |
219 |
catgttcatagttttttgttaattttgttgaaggatttcaacgaactcgtggacttgcaa |
278 |
Q |
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| T |
32356527 |
catgttcatagttttttgtttattttattgaaggatttcaacaaagttgtggtcttgcaa |
32356468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 33581259 - 33581175
Alignment:
| Q |
173 |
cattgaatgcaaatcttaccaactaatgctgtttctatcacatccacatgttcatagttttttgttaattttgttgaaggatttcaacgaa |
263 |
Q |
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| T |
33581259 |
cattgcatgcaaatcttactagctaatgctgcttcta------ctacatattcttagttttttgtttattttgttgaaggatttcaacgaa |
33581175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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