View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_low_11 (Length: 414)
Name: NF5139_2D_low_11
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 18458556 - 18458165
Alignment:
| Q |
15 |
cttacgggtgcaagaaatgttcaaaaagccaagcacgaagaacagaaacagctcgttcaggcaagcctctctgaggcctccaagcattgctatgaatcat |
114 |
Q |
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| T |
18458556 |
cttacgggtgcaagaaatgttcaaaaagccaggcacgaagaacagaaacagctcgttcaggcaagcctctctgaggcctccaagcattgctgtgaatcat |
18458457 |
T |
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| Q |
115 |
tccaagttgctgaagtgcccgctgttgtcggagttggtgatcgacatacctaagcctagaaccttctaacttaacacccaagcaatcatcttcgcccaaa |
214 |
Q |
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| T |
18458456 |
tccaagttgctgaagtgctcgctgttgtcggagttggtgatcgacatacctaagcctagaaccttctaacttaacacccaagcaatcatcttcgcccaaa |
18458357 |
T |
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| Q |
215 |
gtcttgctagccgtcttaatttgtgaagagattgaatcttttagacttcgaaattgctttaagattgtcttcaaggcaagggatgtgtaagattttgatg |
314 |
Q |
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| T |
18458356 |
gtcttgctagccgtcttaatttgtgaagagattgaatcttttagacttcgaaattgctttgagattgtctttaaggcaagggatgtgtaagattttgatg |
18458257 |
T |
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| Q |
315 |
ctccatatcctgttgcttgctcaaatgatgatatcacactttgcatttgatggtggtattgtctgtaccttagctctacctacattgttcat |
406 |
Q |
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| T |
18458256 |
ctccatatcctgttgcttgctcaaatgatgatatcacactttgcatttgatggtggtattgtctgtaccttagctctacctacattgttcat |
18458165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 25419354 - 25419266
Alignment:
| Q |
29 |
aaatgttcaaaaagccaagcacgaagaacagaaacagctcgttcaggcaagcctctctgaggcctccaagcattgctatgaatcattcc |
117 |
Q |
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| T |
25419354 |
aaatgttcgaaaagccaagcacgaagaacagaaacagatctttcgggcaatcctctttgaggtctccaagcattatgatgaatcattcc |
25419266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 43243004 - 43242917
Alignment:
| Q |
15 |
cttacgggtgcaagaaatgttcaaaaagccaagcacgaagaacagaaacagctcgttcaggcaagcctctctgaggcctccaagcatt |
102 |
Q |
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| T |
43243004 |
cttacgggtggaggaaatgttcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctctttggggtctccaagcatt |
43242917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52583024 - 52583079
Alignment:
| Q |
1 |
aattttgatataagcttacgggtgcaagaaa-tgttcaaaaagccaagcacgaagaa |
56 |
Q |
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| T |
52583024 |
aattttgatataagcttacggatg-aagaaagtgctcaaagagccaagcacgaagaa |
52583079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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