View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_2D_low_13 (Length: 397)
Name: NF5139_2D_low_13
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 139 - 383
Target Start/End: Complemental strand, 9071189 - 9070945
Alignment:
| Q |
139 |
ctaagtttaatgaatagccatggactctagggccgacccggtgctcctaagtttatttttcgttggcatcaaaaaatatttcgctagcaacagctacgtg |
238 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9071189 |
ctaagtttaatgaataaccgtggactctagggccgacccggtgctcctaagtttatttttcgttggcataaaaaaatatttcgctagcaacagctacgtg |
9071090 |
T |
|
| Q |
239 |
ccgcgacaatgattagtccgtaactgattttggccgtagccctcgattgagtgttgtctttaatgaggttttggatgtacgagatgtatgagttttattt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9071089 |
ccgcgacaatgattagtccgtaactgattttggcggtagccctcgattgagtgttgtctttaatgaggttttggatgtacgagatgtatgagttttattt |
9070990 |
T |
|
| Q |
339 |
tgagtgttatgcctacatacatcgtcctttatgttgttatttatg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9070989 |
tgagtgttatgcctacatacatcgtcctttatgttgttatttatg |
9070945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 9071334 - 9071217
Alignment:
| Q |
19 |
gtatcagttaaacaataacattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9071334 |
gtatcagttaaacaataccattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatc |
9071235 |
T |
|
| Q |
119 |
atcatatccattggtttt |
136 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9071234 |
atcatatccattggtttt |
9071217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University