View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_low_16 (Length: 364)
Name: NF5139_2D_low_16
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 108 - 336
Target Start/End: Original strand, 25548395 - 25548623
Alignment:
| Q |
108 |
caggaacatcaaggattgaacaagtgaggcaccatgtcggatgatgaaagggaggagaaggagttggatctcacttcacctgatgttgtaaccaaataca |
207 |
Q |
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| T |
25548395 |
caggaacatcaaggattgaacaagtgaggcaccatgtcggatgatgaaagggaggagaaggagttggatctcacttcacctgatgttgtaaccaaataca |
25548494 |
T |
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| Q |
208 |
aaactgcagctgagatcgttaacagtatgtattgtttctcattgtcttttttattttcatattctatatgggtttttgttaattcataaattggatgctt |
307 |
Q |
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| T |
25548495 |
aaactgcagctgagatcgttaacagtatgtattgtttctcattatcttttttattttcatattctatatgggtttttgttaattcataaattggatgctt |
25548594 |
T |
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| Q |
308 |
aaatttattgaatttagcttaggtttatg |
336 |
Q |
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| T |
25548595 |
aaatttattgaatttagcttaggattatg |
25548623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25548287 - 25548336
Alignment:
| Q |
1 |
tcatttctcaactgtaagtgatgctccaattcttcattgttttgataccc |
50 |
Q |
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| T |
25548287 |
tcatttctcaactgtaagtgatgctccaattcttcattgttttgataccc |
25548336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 25548725 - 25548791
Alignment:
| Q |
246 |
tcattgtcttttttattttcatattctatatgggtttttgttaattcataaattggatgcttaaatt |
312 |
Q |
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| T |
25548725 |
tcattgtcttttttatttgcaaattcgaaatgggtttttgtaaattcatagatcagatgcataaatt |
25548791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 32574097 - 32573997
Alignment:
| Q |
137 |
caccatgtcggatgatgaaagggaggagaaggagttggatctcacttcacctgatgttgtaaccaaatacaaaactgcagctgagatcgttaacagtatg |
236 |
Q |
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||||||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||| || ||||||||||||||| |
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| T |
32574097 |
caccatgtcagatgatgagagagatgagaaggagttggatctcacttctcctgatgttgtaaccaagtacaagagtgcagcagaaatcgttaacagtatg |
32573998 |
T |
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| Q |
237 |
t |
237 |
Q |
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| T |
32573997 |
t |
32573997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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