View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_low_21 (Length: 323)
Name: NF5139_2D_low_21
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 6191370 - 6191090
Alignment:
| Q |
19 |
gatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagta |
118 |
Q |
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| T |
6191370 |
gatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga---caggttattgttcccgacaccactgatccaataagta |
6191274 |
T |
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| Q |
119 |
aagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctcc |
218 |
Q |
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| T |
6191273 |
aagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctcc |
6191174 |
T |
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| Q |
219 |
gccaaaagcaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcact |
302 |
Q |
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| T |
6191173 |
gccaaaagtaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcact |
6191090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 305
Target Start/End: Complemental strand, 6184231 - 6184079
Alignment:
| Q |
150 |
tgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgccaaaagcaacctgttccacaagtgatgat |
249 |
Q |
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| T |
6184231 |
tgaagatggatcagatgatgacccttttgctgaacttgatagcatcctgttgggaagtccagagtcctcgccaaaagcaacctgttccacaag---cgat |
6184135 |
T |
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| Q |
250 |
gttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcacttga |
305 |
Q |
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| T |
6184134 |
gttgctgtaagagaagccttgcataaccttgaaagcctattaaaaaattcacttga |
6184079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 6184372 - 6184282
Alignment:
| Q |
27 |
agacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagt |
117 |
Q |
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| T |
6184372 |
agacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaatcattgttcctgaaaccaatgatctgataagt |
6184282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 36 - 305
Target Start/End: Original strand, 37454249 - 37454518
Alignment:
| Q |
36 |
tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagtaaagaaaattcaccaatg |
135 |
Q |
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| T |
37454249 |
tgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacaccaatggttcaataagcaaagaaaaggcaccggtg |
37454348 |
T |
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| Q |
136 |
gatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgccaaaagcaacctgtt |
235 |
Q |
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| T |
37454349 |
gatcttagcaaatccgaagatggatctgacgaggacattttttctgaagttgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgtt |
37454448 |
T |
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| Q |
236 |
ccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcacttga |
305 |
Q |
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| T |
37454449 |
ccacaagcgatgatgttgctgtaagagaagctttgcataaccttgaatgtctattggaaaaatcacttga |
37454518 |
T |
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