View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_2D_low_24 (Length: 308)
Name: NF5139_2D_low_24
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 91596 - 91894
Alignment:
| Q |
1 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgattattg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
91596 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgactattg |
91695 |
T |
|
| Q |
101 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
91696 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttggaataccga |
91795 |
T |
|
| Q |
201 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatgtccatc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
91796 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatc |
91894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 94903 - 95201
Alignment:
| Q |
1 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgattattg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
94903 |
gagaagttcttccatggacaggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgactattg |
95002 |
T |
|
| Q |
101 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
95003 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttgaaataccga |
95102 |
T |
|
| Q |
201 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatgtccatc |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
95103 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatc |
95201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 37154504 - 37154802
Alignment:
| Q |
1 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgattattg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37154504 |
gagaaattcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgactattg |
37154603 |
T |
|
| Q |
101 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37154604 |
ctgatggtccagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttcggaccacgaatttgcagttttggaataccga |
37154703 |
T |
|
| Q |
201 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatgtccatc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37154704 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatc |
37154802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 37150873 - 37150575
Alignment:
| Q |
1 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgattattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
37150873 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcggcaacaatagagcctccttcgatgactattg |
37150774 |
T |
|
| Q |
101 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccga |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| || |
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| T |
37150773 |
ctgatggtgccgttctttcttttcttccttgtgcggtcacaatgcattgttggtctgacataggctttcggaccacaaatttgcagttttggaatactga |
37150674 |
T |
|
| Q |
201 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatgtccatc |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37150673 |
ttctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatc |
37150575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 37159698 - 37159400
Alignment:
| Q |
1 |
gagaagttcttccatggacgggctaggtaggacttgtggtcaaacctgactggatagaactcagggtcagcaacaatagagcctccttggatgattattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
37159698 |
gagaagttcttccatggacgggctaggtaggacttgtgatcaaacctgactggatagaactcagggtcggcaacaatagagcctccttcgatgactattg |
37159599 |
T |
|
| Q |
101 |
ctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccga |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| || |
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|
| T |
37159598 |
ctgatggtgccgttctttcttttcttccttgtgcggtcacaatgcattgttggtctgacataggctttcggaccacaaatttgcagttttggaatactga |
37159499 |
T |
|
| Q |
201 |
ttctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatgtccatc |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37159498 |
ttctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatc |
37159400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 292
Target Start/End: Original strand, 37162365 - 37162539
Alignment:
| Q |
118 |
tcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccgattctgcattaccaaaga |
217 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| | || |||| || | |||| ||||||||||||| || ||| ||||| ||||||| |
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|
| T |
37162365 |
tcttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaaga |
37162464 |
T |
|
| Q |
218 |
caaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgat |
292 |
Q |
| |
|
||||| ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
37162465 |
tgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgat |
37162539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 46315990 - 46315773
Alignment:
| Q |
73 |
acaatagagcctccttggatgattattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttgga |
172 |
Q |
| |
|
||||| || |||||||||||||||| | ||| |||| || |||| || || |||||||| ||||||||||||||||||||| || |||||| ||| |
|
|
| T |
46315990 |
acaattgaacctccttggatgattaatcctgttggttggtttttttccttcctaccttgtgcagtcacaatgcattgttggttttccaatggctttcgga |
46315891 |
T |
|
| Q |
173 |
ccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtg |
272 |
Q |
| |
|
| || || |||| ||||||| || | | || ||||||||| ||||| ||||||||||| ||| |||| || ||||| ||||||||||||| ||| |
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|
| T |
46315890 |
cgacaaaagtgcaattttggagaacagcaatggaatcaccaaagacgaagtcaatggtacctgagataatacaatcacggtagaattgacgcatggtgtg |
46315791 |
T |
|
| Q |
273 |
tacataaagtgtgtcttg |
290 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
46315790 |
agcgtaaagtgtgtcttg |
46315773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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