View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_2D_low_25 (Length: 280)
Name: NF5139_2D_low_25
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 47193587 - 47193328
Alignment:
| Q |
18 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193587 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
47193488 |
T |
|
| Q |
118 |
tatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193487 |
tatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagc |
47193388 |
T |
|
| Q |
218 |
tagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcgacacgatc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47193387 |
tagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcaacacgatc |
47193328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 9792687 - 9792429
Alignment:
| Q |
18 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
117 |
Q |
| |
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|||||||| |||||||||| |||| ||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |
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| T |
9792687 |
aaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatgaaccatgttcca |
9792588 |
T |
|
| Q |
118 |
tatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagc |
217 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |
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| T |
9792587 |
tatactcataaaccaaaagtctatttttcccttcaacacaatatccccacatatcaattaaatttttatggttcaacataccaattgtacttatttaagc |
9792488 |
T |
|
| Q |
218 |
tagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcgacacgat |
276 |
Q |
| |
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|||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
9792487 |
tagaaatttagcttcttcttgatgagcttcatttaagcatttaacagcagcaacacgat |
9792429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 26737203 - 26737303
Alignment:
| Q |
90 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
189 |
Q |
| |
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||||| || ||||||| ||||| ||| || |||||||| ||||| | ||||||| || ||| ||||||| |||||||| ||||||||||||| |||| |
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| T |
26737203 |
agattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggt |
26737302 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
26737303 |
t |
26737303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 6609336 - 6609487
Alignment:
| Q |
20 |
ataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctata |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
6609336 |
ataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccata |
6609435 |
T |
|
| Q |
120 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatat |
171 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6609436 |
tactcataaaccagaagcctatgtttcccctcaacacaatatccccacatat |
6609487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 6624785 - 6624634
Alignment:
| Q |
20 |
ataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctata |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
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|
| T |
6624785 |
ataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccgta |
6624686 |
T |
|
| Q |
120 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatat |
171 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6624685 |
tactcataaaccagaagcctatgtttcccctcaacacaatatccccacatat |
6624634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 21130572 - 21130672
Alignment:
| Q |
90 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
189 |
Q |
| |
|
||||| |||||||||||||||| ||| || |||||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| |||||||| |||| |
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|
| T |
21130572 |
agattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggt |
21130671 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
21130672 |
t |
21130672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 18658734 - 18658897
Alignment:
| Q |
90 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
189 |
Q |
| |
|
||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||||||||| || ||||| |||| |
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|
| T |
18658734 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggt |
18658833 |
T |
|
| Q |
190 |
tcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaa |
253 |
Q |
| |
|
| | | ||||| |||||| |||||| |||||||| ||||||| || | |||||||||||| |
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|
| T |
18658834 |
taagccgtccaatgatgcttacttcagcaagaaattctccttctccttgtttagcttcatttaa |
18658897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 21111612 - 21111712
Alignment:
| Q |
90 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
189 |
Q |
| |
|
||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||| || || || ||||| |||| |
|
|
| T |
21111612 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggt |
21111711 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
21111712 |
t |
21111712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 6609483 - 6609524
Alignment:
| Q |
182 |
catatggttcaacataccaattgtgcttatttcagctagaaa |
223 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
6609483 |
catatggtttaacataccaattttgcttatttaagctagaaa |
6609524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 39132134 - 39132070
Alignment:
| Q |
120 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat |
184 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
39132134 |
tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcat |
39132070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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