View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_2D_low_3 (Length: 649)

Name: NF5139_2D_low_3
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_2D_low_3
NF5139_2D_low_3
[»] chr4 (3 HSPs)
chr4 (1-633)||(51714262-51714895)
chr4 (440-494)||(5795431-5795485)
chr4 (459-491)||(5141713-5141745)
[»] chr5 (2 HSPs)
chr5 (451-501)||(20266805-20266855)
chr5 (440-509)||(31669031-31669100)
[»] chr3 (2 HSPs)
chr3 (440-494)||(31510740-31510794)
chr3 (441-509)||(18316505-18316573)
[»] chr1 (3 HSPs)
chr1 (465-539)||(10059073-10059147)
chr1 (439-498)||(37046984-37047043)
chr1 (450-498)||(41470628-41470676)
[»] chr6 (2 HSPs)
chr6 (445-498)||(6691568-6691621)
chr6 (461-498)||(9876995-9877032)
[»] chr8 (1 HSPs)
chr8 (439-519)||(17727423-17727503)
[»] chr7 (1 HSPs)
chr7 (460-547)||(37242835-37242923)
[»] chr2 (1 HSPs)
chr2 (450-537)||(41202260-41202348)


Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 51714895 - 51714262
Alignment:
Q  1 gtctatggtcatttcaccaaagattgttgctactccattcaatactaactagccactctgatgagtcatacccacatgatgcaccactctcatctaatag 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51714895 gtctatggtcatttcaccaaagattgttgctgctccattcaatactaactagccactctgatgagtcatacccacatgatgcaccactgtcatctaatag 51714796  T
Q  101 aataatcactgatcgcgtgaaaagccagtatgaggatactagacattattggatgcaaattatttgaaataaatgtgactgctgcaatgcaacaactaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51714795 aataatcactgatcgcgtgaaaagccagtatgaggatactagacattattggatgcaaattatttgaaataaatgtgactgctgcaatgcaacaactaat 51714696  T
Q  201 actcaaagattgttgttattacgattttggttagtgtcagactctagcgtcaacctaacttctgctcagatatcataaataacccatggtttagagcgtg 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51714695 actcaaagattgttgttattgcgattttggttagtgtcagactccagcgtcaacctaacttctgctcagatatcataaataacccatggtttagagcgtg 51714596  T
Q  301 aaatatagaatattgagtgccacctcaacttgtgtaacatatacattcattgcatttcaataacactgtttggggtactcagcgttgagtatgctctatg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51714595 aaatatagaatattgagtgccacctcaacttgtgtaacatatacattcattgca-ttcaataacactgtttggggtactcagcgttgagtatgctctatg 51714497  T
Q  401 atcaagtgctcatgtacttatcttagttaaaacttgacaaacc-cacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaaa 499  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51714496 atcaagtgctcatgtacttatctaagttaaaacttgacaaacctcacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaaa 51714397  T
Q  500 gttttaggtttaattttcttcaatgtcaatttggatgggctaggttatatggaatttgtcatatcgcccacggacaagg-aaacttaaaaaccaaattat 598  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  51714396 gttttaggtttaattgtcttcgatgtcaatttggatgggctaggttatatggaatttgtcatatcgcctacggacaaggaaaacttaaaaaccaaattat 51714297  T
Q  599 atcataaatttgtaccagataaatcaactgatgtc 633  Q
    |||| |||||||||||||||||||||||| |||||    
T  51714296 atcacaaatttgtaccagataaatcaacttatgtc 51714262  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 5795485 - 5795431
Alignment:
Q  440 aacccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctc 494  Q
    ||||||||| |||||||| ||||||||||||||   || ||||||||||||||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctc 5795431  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 491
Target Start/End: Original strand, 5141713 - 5141745
Alignment:
Q  459 ggtggtgttgactttagactttggagtatgctc 491  Q
    |||||||||||||| ||||||||||||||||||    
T  5141713 ggtggtgttgacttaagactttggagtatgctc 5141745  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 501
Target Start/End: Original strand, 20266805 - 20266855
Alignment:
Q  451 gttggtcgggtggtgttgactttagactttggagtatgctcctctcaaagt 501  Q
    ||||||| |||||||||||||| |||| || ||||||||||||||||||||    
T  20266805 gttggtctggtggtgttgacttgagacattagagtatgctcctctcaaagt 20266855  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 31669100 - 31669031
Alignment:
Q  440 aacccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaaagttttaggtt 509  Q
    ||||||||| |||||||| | |||||||| |||  ||| ||||||| |||||||||||| || |||||||    
T  31669100 aacccacttgggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggtt 31669031  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 31510794 - 31510740
Alignment:
Q  440 aacccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctc 494  Q
    |||||||||||||||||| |||||| |||||||  ||||| ||||||||||||||    
T  31510794 aacccacttaggttggtctggtggtattgacttgggacttgggagtatgctcctc 31510740  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 509
Target Start/End: Complemental strand, 18316573 - 18316505
Alignment:
Q  441 acccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaaagttttaggtt 509  Q
    |||||||| |||||||| ||||||| || |||  ||| ||||||| |||||||||||| || |||||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggtt 18316505  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 539
Target Start/End: Original strand, 10059073 - 10059147
Alignment:
Q  465 gttgactttagactttggagtatgctcctctcaaagttttaggtttaattttcttcaatgtcaatttggatgggc 539  Q
    |||||||| |||  ||||||| ||||||||||||||| | |||||||||| |||  ||||||||||| |||||||    
T  10059073 gttgacttgagatcttggagtttgctcctctcaaagtctcaggtttaattctctctaatgtcaatttcgatgggc 10059147  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 37046984 - 37047043
Alignment:
Q  439 aaacccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaa 498  Q
    |||||||||| |||||||| |||||||||| |||  ||| ||||||| ||||||||||||    
T  37046984 aaacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaa 37047043  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 41470676 - 41470628
Alignment:
Q  450 ggttggtcgggtggtgttgactttagactttggagtatgctcctctcaa 498  Q
    |||||| | |||||||||| ||| |||| ||||||||||||||||||||    
T  41470676 ggttggcccggtggtgttggcttgagaccttggagtatgctcctctcaa 41470628  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 6691621 - 6691568
Alignment:
Q  445 acttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaa 498  Q
    |||| |||||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  6691621 acttgggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaa 6691568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 9876995 - 9877032
Alignment:
Q  461 tggtgttgactttagactttggagtatgctcctctcaa 498  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  9876995 tggtgttgacttgagactttggagtgtgctcctctcaa 9877032  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 17727503 - 17727423
Alignment:
Q  439 aaacccacttaggttggtcgggtggtgttgactttagactttggagtatgctcctctcaaagttttaggtttaattttctt 519  Q
    |||||||||| ||||||||  ||||||||||||| |||| |  |||| |||||||||||| |||||| |||| || |||||    
T  17727503 aaacccacttgggttggtctcgtggtgttgacttgagacctcagagtgtgctcctctcaaggttttatgtttgatattctt 17727423  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 37242923 - 37242835
Alignment:
Q  460 gtggtgttgactttagac-tttggagtatgctcctctcaaagttttaggtttaattttcttcaatgtcaatttggatgggctaggttat 547  Q
    ||||||||||||| |||| ||||||||||||||||||  || ||| |||||  ||| |||||||| ||||||| ||| |||||| ||||    
T  37242923 gtggtgttgacttgagacctttggagtatgctcctctttaaatttcaggttcgattctcttcaatatcaatttagattggctagtttat 37242835  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 41202260 - 41202348
Alignment:
Q  450 ggttggtcgggtggtgttgactttagactttggagtatgctcctc-tcaaagttttaggtttaattttcttcaatgtcaatttggatgg 537  Q
    |||||||| |||||| ||||| | |||  | |||||||||||||| || |||| ||||||| ||||||||   ||||||||||||||||    
T  41202260 ggttggtctggtggtattgacctgagatctgggagtatgctcctcctcgaagtcttaggttcaattttctctgatgtcaatttggatgg 41202348  T

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