View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_2D_low_40 (Length: 228)

Name: NF5139_2D_low_40
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_2D_low_40
NF5139_2D_low_40
[»] chr8 (31 HSPs)
chr8 (1-192)||(35178784-35178978)
chr8 (1-147)||(32898424-32898571)
chr8 (1-148)||(35177391-35177539)
chr8 (1-145)||(10407563-10407708)
chr8 (1-142)||(1952949-1953090)
chr8 (1-146)||(41754776-41754919)
chr8 (61-146)||(41753996-41754081)
chr8 (1-125)||(45476181-45476306)
chr8 (22-97)||(5965443-5965518)
chr8 (61-148)||(59548-59635)
chr8 (22-97)||(28619546-28619621)
chr8 (61-148)||(43539101-43539188)
chr8 (1-142)||(5738002-5738144)
chr8 (22-151)||(31075291-31075419)
chr8 (1-92)||(28524810-28524902)
chr8 (24-146)||(30134564-30134686)
chr8 (34-156)||(43539813-43539935)
chr8 (1-74)||(45476542-45476616)
chr8 (1-81)||(10406269-10406350)
chr8 (4-133)||(33314872-33314999)
chr8 (41-143)||(1951944-1952045)
chr8 (1-98)||(28619035-28619133)
chr8 (34-151)||(12637771-12637888)
chr8 (22-131)||(28005356-28005465)
chr8 (22-131)||(28062659-28062768)
chr8 (3-124)||(28006576-28006698)
chr8 (3-124)||(28063879-28064001)
chr8 (39-93)||(41121160-41121214)
chr8 (30-127)||(31074011-31074108)
chr8 (20-136)||(8569416-8569532)
chr8 (33-93)||(9625241-9625301)
[»] chr2 (38 HSPs)
chr2 (1-146)||(31091506-31091652)
chr2 (1-147)||(32766217-32766365)
chr2 (1-147)||(32764935-32765081)
chr2 (3-143)||(40000315-40000456)
chr2 (19-145)||(24459444-24459570)
chr2 (1-98)||(14704052-14704149)
chr2 (1-148)||(39015001-39015149)
chr2 (4-143)||(31090165-31090305)
chr2 (1-151)||(24458053-24458204)
chr2 (1-142)||(2910102-2910244)
chr2 (1-146)||(17330209-17330355)
chr2 (1-123)||(17466807-17466930)
chr2 (3-151)||(39016364-39016511)
chr2 (22-151)||(34582671-34582800)
chr2 (1-145)||(7073638-7073783)
chr2 (3-147)||(2911468-2911617)
chr2 (1-141)||(34037652-34037793)
chr2 (8-147)||(5914978-5915118)
chr2 (1-146)||(21733750-21733899)
chr2 (1-146)||(31814323-31814467)
chr2 (22-137)||(38853762-38853877)
chr2 (34-149)||(12746214-12746329)
chr2 (20-142)||(9616034-9616156)
chr2 (1-150)||(14887477-14887627)
chr2 (34-147)||(8420010-8420123)
chr2 (31-148)||(15441981-15442098)
chr2 (100-151)||(14705126-14705177)
chr2 (1-75)||(39999022-39999096)
chr2 (8-124)||(5914324-5914441)
chr2 (1-92)||(17466093-17466185)
chr2 (22-142)||(38854791-38854911)
chr2 (4-114)||(7412122-7412233)
chr2 (21-132)||(11985703-11985814)
chr2 (22-92)||(38984990-38985060)
chr2 (76-123)||(12396062-12396109)
chr2 (22-93)||(26586296-26586367)
chr2 (24-97)||(37607149-37607222)
chr2 (3-86)||(33161825-33161909)
[»] chr5 (30 HSPs)
chr5 (1-146)||(28591092-28591239)
chr5 (1-146)||(8074449-8074594)
chr5 (1-148)||(25590427-25590574)
chr5 (1-146)||(4592859-4593005)
chr5 (2-151)||(2466753-2466904)
chr5 (1-151)||(9538028-9538179)
chr5 (1-146)||(2464667-2464813)
chr5 (1-146)||(8075812-8075958)
chr5 (3-147)||(546017-546161)
chr5 (1-148)||(14891126-14891270)
chr5 (8-147)||(16611725-16611865)
chr5 (1-147)||(21069286-21069433)
chr5 (3-146)||(40612640-40612784)
chr5 (1-148)||(9537019-9537166)
chr5 (1-145)||(19182949-19183094)
chr5 (1-121)||(32640311-32640432)
chr5 (1-138)||(544656-544792)
chr5 (1-98)||(32641705-32641803)
chr5 (1-96)||(4594080-4594174)
chr5 (50-142)||(18400192-18400284)
chr5 (100-151)||(24900411-24900462)
chr5 (74-147)||(13651173-13651245)
chr5 (1-145)||(19186199-19186344)
chr5 (1-103)||(28589740-28589843)
chr5 (20-142)||(12445416-12445537)
chr5 (1-140)||(16978996-16979136)
chr5 (22-134)||(18004648-18004760)
chr5 (1-54)||(40611350-40611404)
chr5 (35-81)||(14881010-14881056)
chr5 (39-83)||(13483174-13483218)
[»] chr7 (46 HSPs)
chr7 (1-147)||(44334429-44334575)
chr7 (1-147)||(7258272-7258419)
chr7 (1-142)||(48646051-48646193)
chr7 (1-150)||(35727693-35727842)
chr7 (1-145)||(44333138-44333281)
chr7 (1-147)||(10899052-10899199)
chr7 (1-143)||(30924988-30925130)
chr7 (1-146)||(48788651-48788797)
chr7 (1-148)||(48777252-48777401)
chr7 (1-149)||(42477376-42477524)
chr7 (3-143)||(46286504-46286645)
chr7 (3-146)||(48647424-48647568)
chr7 (1-151)||(43457450-43457601)
chr7 (1-142)||(7259663-7259805)
chr7 (22-128)||(8374930-8375036)
chr7 (1-146)||(35729065-35729211)
chr7 (1-149)||(12223678-12223827)
chr7 (36-146)||(45583682-45583792)
chr7 (1-147)||(8048763-8048910)
chr7 (1-91)||(45584475-45584566)
chr7 (1-93)||(13578300-13578392)
chr7 (34-147)||(39708100-39708213)
chr7 (34-156)||(8375596-8375718)
chr7 (20-129)||(24844588-24844697)
chr7 (1-149)||(5930112-5930260)
chr7 (22-107)||(33607624-33607709)
chr7 (22-132)||(8879544-8879655)
chr7 (65-148)||(21062813-21062896)
chr7 (72-151)||(24934797-24934876)
chr7 (34-97)||(44530624-44530687)
chr7 (1-90)||(24288845-24288935)
chr7 (1-145)||(19433913-19434058)
chr7 (61-142)||(34704911-34704992)
chr7 (29-149)||(385619-385739)
chr7 (49-109)||(10894385-10894445)
chr7 (1-96)||(44529076-44529172)
chr7 (1-55)||(33060899-33060954)
chr7 (1-94)||(12220073-12220166)
chr7 (22-142)||(27067788-27067904)
chr7 (22-142)||(27210409-27210525)
chr7 (1-86)||(32793229-32793315)
chr7 (23-83)||(43461730-43461789)
chr7 (22-121)||(25621722-25621821)
chr7 (1-62)||(6680512-6680574)
chr7 (105-147)||(21561878-21561920)
chr7 (110-142)||(24844544-24844576)
[»] chr4 (25 HSPs)
chr4 (1-145)||(47878463-47878608)
chr4 (1-146)||(31844720-31844865)
chr4 (1-146)||(42278047-42278193)
chr4 (8-148)||(53771035-53771176)
chr4 (19-149)||(47874559-47874688)
chr4 (1-147)||(39868919-39869064)
chr4 (1-151)||(4703196-4703347)
chr4 (8-142)||(53770335-53770470)
chr4 (1-100)||(50694793-50694893)
chr4 (3-146)||(54574423-54574567)
chr4 (1-146)||(26170638-26170784)
chr4 (8-128)||(26685408-26685524)
chr4 (20-149)||(42391885-42392016)
chr4 (18-141)||(26172939-26173062)
chr4 (8-146)||(48740006-48740145)
chr4 (1-106)||(21621861-21621967)
chr4 (61-146)||(44158502-44158587)
chr4 (22-128)||(21623118-21623224)
chr4 (3-115)||(4701794-4701907)
chr4 (1-84)||(19050298-19050382)
chr4 (61-148)||(19051271-19051358)
chr4 (1-124)||(39870653-39870777)
chr4 (22-93)||(32244689-32244760)
chr4 (1-98)||(25810392-25810490)
chr4 (35-92)||(2786273-2786330)
[»] chr1 (30 HSPs)
chr1 (1-151)||(9339639-9339790)
chr1 (1-148)||(7945533-7945681)
chr1 (1-151)||(9341004-9341155)
chr1 (1-150)||(10333165-10333315)
chr1 (1-146)||(32665749-32665895)
chr1 (22-146)||(5782412-5782536)
chr1 (1-148)||(52440539-52440686)
chr1 (3-146)||(10332984-10333128)
chr1 (1-143)||(6612420-6612563)
chr1 (1-146)||(52439477-52439619)
chr1 (1-148)||(22856676-22856824)
chr1 (6-151)||(7944150-7944294)
chr1 (1-147)||(32664510-32664647)
chr1 (4-147)||(11060766-11060910)
chr1 (22-142)||(8975161-8975281)
chr1 (8-117)||(5783095-5783205)
chr1 (1-93)||(6613957-6614051)
chr1 (65-146)||(534601-534682)
chr1 (1-151)||(3117642-3117793)
chr1 (22-67)||(44720850-44720895)
chr1 (2-97)||(25037925-25038020)
chr1 (2-97)||(25043137-25043232)
chr1 (62-135)||(17589681-17589754)
chr1 (2-151)||(34088449-34088591)
chr1 (42-151)||(44019979-44020088)
chr1 (34-151)||(50107216-50107333)
chr1 (1-59)||(22857558-22857617)
chr1 (1-47)||(33342513-33342560)
chr1 (33-134)||(1001164-1001265)
chr1 (85-146)||(2923860-2923921)
[»] chr3 (34 HSPs)
chr3 (2-147)||(52318297-52318443)
chr3 (1-151)||(48572978-48573129)
chr3 (1-151)||(17700511-17700663)
chr3 (1-147)||(55388070-55388217)
chr3 (1-146)||(34263803-34263949)
chr3 (1-147)||(17701897-17702045)
chr3 (1-146)||(36278950-36279096)
chr3 (3-146)||(2591625-2591769)
chr3 (1-144)||(55389448-55389592)
chr3 (28-147)||(2592014-2592133)
chr3 (22-149)||(19114528-19114655)
chr3 (8-146)||(45600925-45601063)
chr3 (34-147)||(33428448-33428561)
chr3 (22-147)||(47118052-47118177)
chr3 (1-141)||(50753820-50753961)
chr3 (1-144)||(20464069-20464213)
chr3 (22-150)||(47075352-47075480)
chr3 (1-108)||(53959079-53959187)
chr3 (1-103)||(36280296-36280399)
chr3 (1-111)||(48574438-48574548)
chr3 (6-149)||(48808359-48808505)
chr3 (1-146)||(52316977-52317123)
chr3 (1-146)||(53957673-53957817)
chr3 (23-112)||(11773053-11773142)
chr3 (8-146)||(19115133-19115271)
chr3 (1-150)||(3671033-3671182)
chr3 (69-151)||(19331101-19331183)
chr3 (23-146)||(49261539-49261659)
chr3 (72-148)||(26652655-26652731)
chr3 (1-57)||(48809634-48809690)
chr3 (1-92)||(36827454-36827546)
chr3 (51-117)||(47427887-47427953)
chr3 (20-57)||(27204165-27204202)
chr3 (1-132)||(612226-612358)
[»] chr6 (8 HSPs)
chr6 (1-147)||(30747996-30748143)
chr6 (22-148)||(31218951-31219077)
chr6 (22-142)||(31219161-31219281)
chr6 (22-146)||(23507947-23508070)
chr6 (4-142)||(5265201-5265339)
chr6 (20-142)||(12676469-12676591)
chr6 (17-142)||(3778790-3778915)
chr6 (51-148)||(6468811-6468908)
[»] scaffold0034 (1 HSPs)
scaffold0034 (29-145)||(116054-116170)
[»] scaffold0039 (3 HSPs)
scaffold0039 (1-144)||(79073-79217)
scaffold0039 (1-148)||(79662-79810)
scaffold0039 (65-141)||(74357-74433)
[»] scaffold0767 (1 HSPs)
scaffold0767 (2-142)||(5601-5742)
[»] scaffold0369 (1 HSPs)
scaffold0369 (20-86)||(9135-9201)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35178784 - 35178978
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35178784 acatcatcacttaacagattttttaacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaa 35178883  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc---aaaaagtattaaaaaatgatttttaaaggagagatgtagagtgtgt 192  Q
    | | ||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  35178884 tatgacagcgatgtgcagagtcagggaccaaagtgactatttgctcgaaaaaaagtattaaaaaatgatttttaaaggagagatgtagagtgtgt 35178978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 32898424 - 32898571
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||     
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacct 32898523  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    |||| |||| ||| ||||||||||||||| ||||||||||||||||||    
T  32898524 atgtgacagtgagttgcagagtcagggactaaagtgactatttgctca 32898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 35177539 - 35177391
Alignment:
Q  1 acatcatcacttaacagatt-ttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||     
T  35177539 acatcatcacttaacagattattttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacct 35177440  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| |||||||| |||||| | |||||| ||| |||||||||||||||    
T  35177439 atgtgacagcgagctgcagaattagggactaaattgactatttgctcaa 35177391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 10407563 - 10407708
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||| | | |||||||||||| ||||||||| |||||  ||||     
T  10407563 acatcatcacttaacagatttttttaacgtcaggaactaaagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacct 10407662  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||| |||| ||| |||||| |||| ||| ||||||||||||||||    
T  10407663 atgtgacagtgagctgcagaatcagagactaaagtgactatttgct 10407708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 1952949 - 1953090
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || | |||  ||||||||||||| ||||||| |||||| || |     
T  1952949 acatcatcacttaacagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagacttatttgtatgtaatcct-agtcagagatct 1953047  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    || | ||| |||| |||||| |||||||| |||||||||||||    
T  1953048 atatgacaacgagctgcagaatcagggactaaagtgactattt 1953090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 41754776 - 41754919
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||||| |||||||||| ||| | ||||||| |||| ||||||| | | ||||| |||| |||||||||||||||||||||| || | |    
T  41754776 acatcatcacttaacagtttttttaacggcaggg-ctaaagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatcta 41754874  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||| ||||||||||||||| ||| |||  |||||||||||||||||    
T  41754875 tgtgacagcgaggtgcagaatca-ggattaaagtgactatttgctc 41754919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 41754081 - 41753996
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||||||||| ||| ||||||||||||||||||||||| |||| ||||| |||||||||  ||||||| |||||||||||||||||    
T  41754081 tcagggacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtgactatttgctc 41753996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 45476306 - 45476181
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||  |||||||| | |||| |||||||||||||||||| |||| ||| |||||     
T  45476306 acatcatcacttaacagatttttttaacgggagagactaaagtgataacagaagtgcagagtcagagacttatttgtatttaattctgaatcatggacct 45476207  T
Q  100 atgtaacagcgaggtgcagagtcagg 125  Q
     | |||||||||| || ||| |||||    
T  45476206 ttctaacagcgagatgaagaatcagg 45476181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 5965443 - 5965518
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    |||||||||||||||||||||||||| ||||||||| | |||  ||||| ||||||||||||||||||||||||||    
T  5965443 tttaacgtcagagactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcagggac 5965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 59635 - 59548
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||||||||  |||||| || |||||||||||||||| || || ||||||||||| | |||||||||| ||||||||||||| |||||    
T  59635 tcagggactattttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtgactatttactcaa 59548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 28619546 - 28619621
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    ||||| ||||||||||||||||||||| |||||||| | |||  ||| | ||||||||||||||||||||||||||    
T  28619546 tttaatgtcagagactaaagtgataatagaagtgcagagtcaatgacctctttgtatttaatcctgagtcagggac 28619621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 43539188 - 43539101
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||||||||  |||||| || |||||||||| ||||| || || ||||||||||||| ||| |||||||||||||||||||| |||||    
T  43539188 tcagggactattttgtagtttatcctgagtcggggactaaagtgacagcgaggtgcaaagttagggaccaaagtgactatttactcaa 43539101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 5738002 - 5738144
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || ||||||| || ||||| ||||||||| |||||| || | |||   |||| ||||||||||||| ||||||| |||||     
T  5738002 acatcatcacttaacagaattatttaacgccaaagactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacct 5738101  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||| ||| |||  |||| ||||||| || |||||||| ||||    
T  5738102 atgtcacaacgatatgcaaagtcaggaactaaagtgaccattt 5738144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 31075291 - 31075419
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||||| |||||||||||||| || ||| || | ||||| |||  |||||||||||| ||||| || | |||  ||||||| |||||||||||||    
T  31075291 tttaacgtcagtgactaaagtgataacgggagtacatattcagg-actattttgtatttaatgctgagccaagaacctttgtaacaacgaggtgcagagt 31075389  T
Q  122 cagggaccaaagtgactatttgctcaaaaa 151  Q
    ||| ||||||| |||| |||| ||| ||||    
T  31075390 cagagaccaaattgaccatttactctaaaa 31075419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28524902 - 28524810
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtca 92  Q
    ||||||||| |||||| | || ||||||||||||||||||| |||||| ||||||||| | ||| ||| |  |||||||||||||||||||||    
T  28524902 acatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtca 28524810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 30134686 - 30134564
Alignment:
Q  24 taacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtca 123  Q
    |||||| ||| | |||||||||||  |||||||| | |||   |||| ||||||||||||| |||||  ||||||  ||| ||||||||||||||||| |    
T  30134686 taacgttagatattaaagtgataacagaagtgcagagtcacacacttctttgtatttaatcatgagtaggggacctttgtgacagcgaggtgcagagtta 30134587  T
Q  124 gggaccaaagtgactatttgctc 146  Q
     |||| ||||||| |||||||||    
T  30134586 aggactaaagtgattatttgctc 30134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 43539813 - 43539935
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    ||||||| ||||||  || ||||| | ||| |||||  |||||| || |||||||||  ||||| ||  | ||||||||||||| |||||||||||||||    
T  43539813 gactaaactgataacagatgtgcatattcaaggactattttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggaccaaag 43539912  T
Q  134 tgactatttgctcaaaaagtatt 156  Q
    || |||||| |||||||| ||||    
T  43539913 tgtctatttactcaaaaattatt 43539935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45476542 - 45476616
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttattt 74  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||  |||||||| | |||| |||||||||    
T  45476542 acatcatcacttaacatatttttttaacgacagagactaaagtgataagagaagtgcagagtcagcgacttattt 45476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10406350 - 10406269
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtattta 81  Q
    |||||||||||||||||||||||| |||  ||| ||||||||||||||| |||||||| | |||| ||||| ||| ||||||    
T  10406350 acatcatcacttaacagatttttttaacaccagggactaaagtgataatagaagtgcagagtcagagacttgtttttattta 10406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 33314999 - 33314872
Alignment:
Q  4 tcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatg 102  Q
    ||||||||||||||| |||||||||  ||   |||||||||||||  |||||  | ||||   ||||||||||||||||||| |||||||| ||||  ||    
T  33314999 tcatcacttaacagaattttttaacagca---actaaagtgataaccgaagtatagaatcgatgacttatttgtatttaatcttgagtcagagacctttg 33314903  T
Q  103 taacagcgaggtgcagagtcagggaccaaag 133  Q
      ||||||||||||| ||| |||||||||||    
T  33314902 agacagcgaggtgcaaagtaagggaccaaag 33314872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 1952045 - 1951944
Alignment:
Q  41 gtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactat 140  Q
    ||||||||| || |||| | ||||  |||||||||||||||||||||||||| ||| | |||||| ||| ||||||| | | || || ||||||||||||    
T  1952045 gtgataatgaaaatgcagagtcagaaacttatttgtatttaatcctgagtca-ggatctatgtaatagcaaggtgcataattagagatcaaagtgactat 1951947  T
Q  141 ttg 143  Q
    |||    
T  1951946 ttg 1951944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28619133 - 28619035
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    |||||||||||||||| | || ||||||| | |||||||||||||||| | ||||||| | |||  || || ||||||||||||| || ||||||||||    
T  28619133 acatcatcacttaacaaaattatttaacggccgagactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaatcatgggtcagggacc 28619035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 12637771 - 12637888
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    |||||||||||||| ||||||||| | ||||| |||  |||||||| |||||||||| |||||||  |||  || ||| ||| | ||||| ||||||| |    
T  12637771 gactaaagtgataacggaagtgcacattcaggaactactttgtattcaatcctgagttagggacctttgttgcaacgaagtgtatagtcaaggaccaagg 12637870  T
Q  134 tgactatttgctcaaaaa 151  Q
    |||| |||| || |||||    
T  12637871 tgaccatttactaaaaaa 12637888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 28005465 - 28005356
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||| || |||||||||||||||    ||| ||| | || ||||||  ||||||||| ||||||||||||||| |  ||| ||| ||||||| |||||    
T  28005465 tttaacatcggagactaaagtgatatcataagagcacattcggggactactttgtatttgatcctgagtcagggatctttgtgacaacgaggtgtagagt 28005366  T
Q  122 cagggaccaa 131  Q
    ||||||||||    
T  28005365 cagggaccaa 28005356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 28062768 - 28062659
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||| || |||||||||||||||    ||| ||| | || ||||||  ||||||||| ||||||||||||||| |  ||| ||| ||||||| |||||    
T  28062768 tttaacatcggagactaaagtgatatcataagagcacattcggggactactttgtatttgatcctgagtcagggatctttgtgacaacgaggtgtagagt 28062669  T
Q  122 cagggaccaa 131  Q
    ||||||||||    
T  28062668 cagggaccaa 28062659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 28006576 - 28006698
Alignment:
Q  3 atcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    ||||||| |||||||| || ||||||||||| |  ||||||||||| |||||| || | ||| |||||  ||| |||||||| |||| ||||| |||  |    
T  28006576 atcatcagttaacagaattatttaacgtcaggggttaaagtgataacggaagtacacattcaaggactactttatatttaattctgattcaggaaccttt 28006675  T
Q  102 gtaacagcgaggtgcagagtcag 124  Q
    | |||| ||| ||||||||||||    
T  28006676 gcaacatcgaagtgcagagtcag 28006698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 28063879 - 28064001
Alignment:
Q  3 atcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    ||||||| |||||||| || ||||||||||| |  ||||||||||| |||||| || | ||| |||||  ||| |||||||| |||| ||||| |||  |    
T  28063879 atcatcagttaacagaattatttaacgtcaggggttaaagtgataacggaagtacacattcaaggactactttatatttaattctgattcaggaaccttt 28063978  T
Q  102 gtaacagcgaggtgcagagtcag 124  Q
    | |||| ||| ||||||||||||    
T  28063979 gcaacatcgaagtgcagagtcag 28064001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 41121214 - 41121160
Alignment:
Q  39 aagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    |||||||||| |||||||| | |||| ||||| ||||||||||||| ||||||||    
T  41121214 aagtgataatagaagtgcatagtcagagacttctttgtatttaatcatgagtcag 41121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 31074108 - 31074011
Alignment:
Q  30 cagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcaggga 127  Q
    ||||||||||||||||||  |||||||| | ||||  |||  |||| ||||||||| ||||||| |||   ||| ||||| || ||||||||||||||    
T  31074108 cagagactaaagtgataacagaagtgcacattcagaaactactttgcatttaatccagagtcagagacttttgtgacagcaagatgcagagtcaggga 31074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 8569532 - 8569416
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcaga 119  Q
    ||||||||||||| ||||||| |||||| | ||||||| | |||   |||  ||||||||||||| |||||||  ||||  ||| | ||||||||| |||    
T  8569532 tttttaacgtcagggactaaactgataacgaaagtgcacattcataaactactttgtatttaatcatgagtcaaagacctttgtgagagcgaggtgaaga 8569433  T
Q  120 gtcagggaccaaagtga 136  Q
    ||||  || ||||||||    
T  8569432 gtcaatgatcaaagtga 8569416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 9625301 - 9625241
Alignment:
Q  33 agactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    ||||||||||||||||||||||||| | ||| | |||  ||||| ||||||||| ||||||    
T  9625301 agactaaagtgataatggaagtgcatattcaagtactactttgtgtttaatcctaagtcag 9625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 31091506 - 31091652
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||     
T  31091506 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 31091605  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  31091606 atgtgacagcaaggtgcagagtcagggaccaaagtgactatttgctc 31091652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 32766217 - 32766365
Alignment:
Q  1 acatcatcacttaacagatttt--ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  32766217 acatcatcacttaacagattttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacc 32766316  T
Q  99 aatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
     |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  32766317 tatgtgacaacgaggtgcagagtcagggaccaaagtgactatttgctca 32766365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 32765081 - 32764935
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||| |    
T  32765081 acatcatcacttaacatattttttaacgtcagggattaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagaccta 32764982  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    | | ||| | || |||||| |||||||| ||||||||||||| ||||    
T  32764981 tatgacaactagctgcagaatcagggactaaagtgactatttactca 32764935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 40000315 - 40000456
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||||||| |||||||||| || ||||||||||| |||||||||   | || ||||||||||||||||||||| | ||||||| | ||    
T  40000315 atcatcacttaacagattttcttaacgtcagggaataaagtgataacggaagtgcagggttagagacttatttgtatttaatcctcaatcagggatctat 40000414  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttg 143  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  40000415 gtaacagcgaggtgcagagtcagggaccaaagtgacaatttg 40000456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 24459444 - 24459570
Alignment:
Q  19 ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcag 118  Q
    |||||||| ||||| ||||||||||||||| ||||||||   |||| ||||||||||||||||||||||| ||||||||| |||| |||||||| |||||    
T  24459444 ttttttaatgtcagggactaaagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgacagcgagatgcag 24459543  T
Q  119 agtcagggaccaaagtgactatttgct 145  Q
    |||||||||||||||||||| ||||||    
T  24459544 agtcagggaccaaagtgactctttgct 24459570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14704149 - 14704052
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  14704149 acatcatcacttaacatattttttaacgtcagggactaaagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacc 14704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 39015149 - 39015001
Alignment:
Q  1 acatcatcacttaacagat-tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| || |||||||||| ||| |||||| |||||||| ||||||| | |||  ||| ||||||||||||||||||||||| ||| |     
T  39015149 acatcatcacttaacaaatatttttaacgttagaaactaaaatgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatct 39015050  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    ||||  ||||||||||||||||||||||| ||||||| |||||||||||    
T  39015049 atgtggcagcgaggtgcagagtcagggacaaaagtgattatttgctcaa 39015001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 31090305 - 31090165
Alignment:
Q  4 tcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatg 102  Q
    ||||||||||||| ||||||| |||||||| ||||||| | |||| ||||||||| | |||| ||||||||| ||||||||||||||||| ||||| |||    
T  31090305 tcatcacttaacatatttttttaacgtcagggactaaaatcataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatg 31090206  T
Q  103 taacagcgaggtgcagagtcagggaccaaagtgactatttg 143  Q
    | |||||||| |||||| |||||||| ||| ||||||||||    
T  31090205 tgacagcgagctgcagaatcagggactaaattgactatttg 31090165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 24458204 - 24458053
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||||| | ||||| | | ||||  |||||||||||||||||  |||||||||||||     
T  24458204 acattatcacttaatagatttttttaacgttagagactaaagtgataacgaaagtgtagagtcagaaacttatttgtatttaattttgagtcagggacct 24458105  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| | |||||| |||| | |||||||| ||||||||||||||||||||||    
T  24458104 atgtgatagcgagctgcataatcagggactaaagtgactatttgctcaaaaa 24458053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2910244 - 2910102
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||| | |||| |||||||||||||||||||| |||||||||| |     
T  2910244 acatcatcacttaacagatttttttaacgtcagggactaaagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatct 2910145  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||| |||||||| |||| | |||  ||| ||||||| |||||    
T  2910144 atgtgacagcgagctgcaaaatcaaagactaaagtgattattt 2910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17330209 - 17330355
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| |   |||||||||  |||||||||||||| |||| |||| | |||| |||||||||||||||||||||||||||||||||     
T  17330209 acatcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacct 17330308  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| |||| ||| |||||| ||| |||| |||| ||||||||||||    
T  17330309 atgtgacagtgagctgcagaatcaaggactaaagcgactatttgctc 17330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17466807 - 17466930
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || |||||||||  ||||||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||| | |      
T  17466807 acatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggctt 17466906  T
Q  100 atgtaacagcgaggtgcagagtca 123  Q
    |||| |||||||||||||||||||    
T  17466907 atgtgacagcgaggtgcagagtca 17466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 39016364 - 39016511
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtc--agggacca 99  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||     || ||||||||||||||||||||||||||  || ||       
T  39016364 atcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgca----gagtgacttatttgtatttaatcctgagtcagagagatgt 39016459  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| |||||||| |||||| |||| ||| ||||||||||||||||||||||    
T  39016460 atgtgacagcgagctgcagaatcagagactaaagtgactatttgctcaaaaa 39016511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 34582671 - 34582800
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||||| |||||||||||||| ||||||||| | |||||||||  |||||||||||||| ||||||  ||||  ||||||||| |||||||||||    
T  34582671 tttaacgtcagggactaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgtaacagcaaggtgcagagt 34582770  T
Q  122 cagggaccaaagtgactatttgctcaaaaa 151  Q
    ||||||| || ||||| |||| || |||||    
T  34582771 cagggactaacgtgaccatttacttaaaaa 34582800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 7073783 - 7073638
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| |   |||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||| || |||| ||||     
T  7073783 acatcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagacttatttgtatttaatcccgaatcagagacct 7073684  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||  ||||  || |||||| | | |||| ||||||||||||||||    
T  7073683 atgcgacagtaagctgcagaatgaaggactaaagtgactatttgct 7073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 2911468 - 2911617
Alignment:
Q  3 atcatcacttaacagatttttt-aacgtcagagacta----aagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    |||||||||||||||||||||| |||||||| |||||    ||||||||| ||||||||||| |||| ||||||||| |||||||   ||||||| || |    
T  2911468 atcatcacttaacagatttttttaacgtcagggactaactaaagtgataacggaagtgcaaagtcagagacttatttatatttaactttgagtcatggcc 2911567  T
Q  98 caatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
      |||| |||||||| ||||||  ||| ||||||||||||||||||||||    
T  2911568 ttatgtgacagcgagctgcagaaccagagaccaaagtgactatttgctca 2911617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 34037652 - 34037793
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | |||||||||| | |  |||||||||||||  |||||||| | |||  ||||||||||||||||||||||||| | |||||     
T  34037652 acatcatcacttaacataattttttaacggcgggaactaaagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacct 34037751  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatt 141  Q
     | | ||||| ||||||||||||| |||| ||||||||||||    
T  34037752 ttatgacagcaaggtgcagagtcaaggactaaagtgactatt 34037793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 5914978 - 5915118
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||||||| | || ||| ||||||| ||||||||| | | || ||||| |||||||||||| ||||||||  |||| || | |     
T  5914978 cacttaacagaattatttaacgtcggggattaaggtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtcaaagacctatttgaa 5915077  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  5915078 agcgaggtgcagagtcatggactaaagtgactatttgctca 5915118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 21733750 - 21733899
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatc---ctgagtcaggga 96  Q
    |||||||||||||||||| |||||||||  ||   ||||||||||| | ||||||||| | |||| |||||||||||||||||||    |||||||||||    
T  21733750 acatcatcacttaacagaattttttaactgcaacaactaaagtgatgacggaagtgcagagtcagagacttatttgtatttaatcatgatgagtcaggga 21733849  T
Q  97 ccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||  ||| ||| ||| || || |||||||||| | |||||||||||||||    
T  21733850 cctttgtgacaacgatgtacaaagtcagggactagagtgactatttgctc 21733899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 31814323 - 31814467
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || ||||| |  || |||||||||||||| ||||||||| | |||   |||| ||| |||||||| ||||||||| ||||     
T  31814323 acatcatcacttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtcaaaaacttctttatatttaattctgagtcagagacc- 31814421  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
     | ||||||||||||||||||| |  ||| |||||||||||||||||    
T  31814422 -tttaacagcgaggtgcagagtaaatgactaaagtgactatttgctc 31814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 38853877 - 38853762
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||||| ||||||| |||||| ||||||||| | | |||||||  |||||||||||||||||||||| ||||  | | |||  || ||| |||||    
T  38853877 tttaacgtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtcagagacctttatgacaatgaagtgtagagt 38853778  T
Q  122 cagggaccaaagtgac 137  Q
    ||||||||||||||||    
T  38853777 cagggaccaaagtgac 38853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 12746214 - 12746329
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    |||||||||||||| ||||| ||| | ||||| |||  ||||||||||||||||||||||| |||  |   || |||||||||||||||| | |||||||    
T  12746214 gactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtcaagaaccaaag 12746313  T
Q  134 tgactatttgctcaaa 149  Q
    |||| |||| ||||||    
T  12746314 tgaccatttactcaaa 12746329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 9616034 - 9616156
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcaga 119  Q
    ||||||||||| ||||||||| |||||| | ||||||  | |||||||||  ||||||||||||  ||||| ||| |||  | |||||||  |||| |||    
T  9616034 tttttaacgtcggagactaaattgataacgaaagtgcgcattcagggactactttgtatttaattatgagttaggaacctttataacagcagggtgtaga 9616133  T
Q  120 gtcagggaccaaagtgactattt 142  Q
    |||| ||||||||||||||||||    
T  9616134 gtcaaggaccaaagtgactattt 9616156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 14887477 - 14887627
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||| |||||| | || |||||||  ||||| ||||||||  |||||| |||| | ||||||  |  ||| | |||||||||||||||||||||     
T  14887477 acatcatcagttaacaaaattatttaacgctagagattaaagtgacgatggaattgcacattcagggtatactttatgtttaatcctgagtcagggacct 14887576  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaa 150  Q
      || |||||||||||||||||  |||||||||||||| |||| |||||||    
T  14887577 tcgtgacagcgaggtgcagagtttgggaccaaagtgaccatttactcaaaa 14887627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 8420123 - 8420010
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    ||||||| ||||||  |||||||| | |||||||||  ||||||||||||| ||| ||||||||   ||| || ||||  ||||||||||||||||||||    
T  8420123 gactaaactgataacagaagtgcacattcagggactactttgtatttaatcttgactcagggacatttgtgaccgcgaaatgcagagtcagggaccaaag 8420024  T
Q  134 tgactatttgctca 147  Q
    |||| |||| ||||    
T  8420023 tgaccatttactca 8420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 15441981 - 15442098
Alignment:
Q  31 agagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggacca 130  Q
    ||||||||||||||||||  ||||||| | ||| |||||  ||||||||||||||||||||||| | |  ||| |||||||||  ||||||||| || ||    
T  15441981 agagactaaagtgataataaaagtgcacattcaaggactactttgtatttaatcctgagtcaggaatctttgtgacagcgaggaacagagtcagagaaca 15442080  T
Q  131 aagtgactatttgctcaa 148  Q
    ||| ||| |||| |||||    
T  15442081 aagcgaccatttactcaa 15442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 14705126 - 14705177
Alignment:
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14705126 atgtgacagcgaggtgcagagtccgggaccaaagtgactatttgctctaaaa 14705177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39999096 - 39999022
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttg 75  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||  | |||||||||||| |||||||||||    
T  39999096 acatcatcacttaacatatttttttaacgtcagagattaaagtgataaccg-agtgcaaaatcaaggacttatttg 39999022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 5914441 - 5914324
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||||||||  | |||||||||||| || |||||||| |||  ||||| ||||||||||||  |||||||| |||| || | ||    
T  5914441 cacttaacagaattatttaacgtcatggtctaaagtgataacgggagtgcaaagtcactgacttctttgtatttaattgtgagtcagagacctatatcac 5914342  T
Q  107 agcgaggtgcagagtcag 124  Q
    | ||||||||| ||||||    
T  5914341 aacgaggtgcaaagtcag 5914324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 17466185 - 17466093
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtca 92  Q
    |||||||||||||||| | || ||| ||||||| ||||||||||| || ||||||||| | |||| ||  | |||||||||||||||||||||    
T  17466185 acatcatcacttaacataattgtttcacgtcagggactaaagtgaaaacggaagtgcagagtcagagatatctttgtatttaatcctgagtca 17466093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 38854911 - 38854791
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||| |||| ||||||| ||||||   ||||||| | | ||| |||  |||||||||||||||||||||  ||||  | | ||| ||| ||| |||||    
T  38854911 tttaacttcagtgactaaattgataacataagtgcacatttaggaactactttgtatttaatcctgagtcaaagacctttatgacaacgaagtgtagagt 38854812  T
Q  122 cagggaccaaagtgactattt 142  Q
    |||||||||||||||||||||    
T  38854811 cagggaccaaagtgactattt 38854791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 7412233 - 7412122
Alignment:
Q  4 tcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatg 102  Q
    ||||||||||||| | || ||||| || || |||||||||||||| |||||||||  ||||| ||||| ||| ||||||||| |||||||| || | |||    
T  7412233 tcatcacttaacataattatttaatgttagggactaaagtgataacggaagtgcactatcagtgacttctttatatttaatcttgagtcagagatctatg 7412134  T
Q  103 taacagcgaggt 114  Q
    | ||| ||||||    
T  7412133 tgacaacgaggt 7412122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 11985814 - 11985703
Alignment:
Q  21 ttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagag 120  Q
    ||||||||| || ||||||| |||||| | || ||||   |||| ||||  |||||||||||||||||||||| ||||  | |||||||||||||  |||    
T  11985814 ttttaacgttagggactaaactgataacgaaaatgcaccttcagagactactttgtatttaatcctgagtcagagacctttataacagcgaggtgtggag 11985715  T
Q  121 tcagggaccaaa 132  Q
    ||||||| ||||    
T  11985714 tcagggatcaaa 11985703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 38984990 - 38985060
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtca 92  Q
    |||||||| || |||||||||||||| ||||||||| | ||| |||||| |||||||||||| | ||||||    
T  38984990 tttaacgttagtgactaaagtgataacggaagtgcagagtcaaggacttctttgtatttaattccgagtca 38985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 12396109 - 12396062
Alignment:
Q  76 tatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtca 123  Q
    ||||||||||||| ||| ||||| |||||| |||||||||||||||||    
T  12396109 tatttaatcctgattcatggacctatgtaagagcgaggtgcagagtca 12396062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 26586296 - 26586367
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    ||||||| |||||||||||||||||| ||||||||| | |||  ||||  ||| ||||||||| ||||||||    
T  26586296 tttaacgccagagactaaagtgataacggaagtgcacattcaaagactactttatatttaatcttgagtcag 26586367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 37607222 - 37607149
Alignment:
Q  24 taacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    ||||||||| |||||||||||||| ||||||||| | | | |||||   |||||||||||| ||||| ||||||    
T  37607222 taacgtcagggactaaagtgataacggaagtgcacattaaaggactaccttgtatttaatcatgagttagggac 37607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 33161909 - 33161825
Alignment:
Q  3 atcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcct 86  Q
    |||||||||||||| | || ||||||||||  |||||||||||||| |||||| || | || | ||||| |||| ||||||||||    
T  33161909 atcatcacttaacaaaattatttaacgtcaaggactaaagtgataacggaagtacatagtctgagacttctttgcatttaatcct 33161825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 28591092 - 28591239
Alignment:
Q  1 acatcatcacttaacagatttttt--aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    ||||||||||||||||||||||||  |||||| | |||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  28591092 acatcatcacttaacagattttttgtaacgtcggggactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacc 28591191  T
Q  99 aatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
     |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  28591192 tatgtgacagcgaggtgcagagtcagggatcaaagtgactatttgctc 28591239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8074594 - 8074449
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||  |    
T  8074594 acatcatcacttaaccgattttttaacgtcaggaactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggactta 8074495  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||| |||||||| |||| | |||||||| |||||||||||||||||    
T  8074494 tgtgacagcgagctgcataatcagggactaaagtgactatttgctc 8074449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 25590574 - 25590427
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||  |||||||| |||||| |||||||||||||||||||| ||||||||||||     
T  25590574 acatcatcacttaacaaaattttttaacgtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtatttaatcc-gagtcagggacct 25590476  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||||||    
T  25590475 atgtgacagcgaggtgcagagtcagaaaacaaagtgactatttgctcaa 25590427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 4593005 - 4592859
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||      
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggactt 4592906  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| |||||||| | || | |||||||| |||||||||||||||||    
T  4592905 atgtgacagcgagctacataatcagggactaaagtgactatttgctc 4592859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 2466753 - 2466904
Alignment:
Q  2 catcatcacttaacagatttt--ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||| ||||||||| | | |||||||||||| ||||||||||||| |||  ||||     
T  2466753 catcatcacttaacagattttttttaacgtcagggactaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacct 2466852  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  2466853 atgtgatagcgaggtgcagagtcagagaccaaagtgactatttgctctaaaa 2466904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9538028 - 9538179
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||| ||||||||||| | || |||||| |||||||||||| |||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||     
T  9538028 acataatcacttaacataattatttaacatcagagactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacct 9538127  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    || | ||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  9538128 atatgacaacgagatgcagagtcagggaccaaagtgactatttgctctaaaa 9538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2464813 - 2464667
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||| | | |||||||||||||||||||||| ||||||| |||||     
T  2464813 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacct 2464714  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || | |||||||| |||||| |||| ||| |||||||||||||||||    
T  2464713 atatgacagcgagctgcagaatcagtgactaaagtgactatttgctc 2464667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8075812 - 8075958
Alignment:
Q  1 acatcatcacttaacagattttttaa-cgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||| ||||||  |||| ||||||||||||| ||| ||||||| |     
T  8075812 acatcatcacttaacagattttttaaacgtcagggactaaagtgataacgaaagtgcagaatcagatacttttttgtatttaatcttgaatcagggatct 8075911  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || |||||||||||||||||||||  |||||||| ||||||||||||    
T  8075912 atctaacagcgaggtgcagagtcaatgaccaaagcgactatttgctc 8075958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 546017 - 546161
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||| | ||| |||||||| ||||||||||||||||||||||||| ||    
T  546017 atcatcacttaacaaatttttttaacgtcagggactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctat 546116  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    || |||||||| |||| | || ||||| ||||||||||||||||||    
T  546117 gtgacagcgagctgcaaaatc-gggactaaagtgactatttgctca 546161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14891126 - 14891270
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| | | |||| |||||    | |||||||| |||||||| ||||     
T  14891126 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgtagagtcagagactt----gcatttaatcatgagtcagagacct 14891221  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  14891222 atgtgacagcgaggtgcagagtgagggaccaaagtgactatttgctcaa 14891270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 16611865 - 16611725
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||| | ||| |||||||||||||||||||||| |||| |||| ||    
T  16611865 cacttaacagaattatttaacgtcagagactaaagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgac 16611766  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    ||||||||| ||||||| | |  |||||||| |||||||||    
T  16611765 agcgaggtgtagagtcaagaattaaagtgaccatttgctca 16611725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 21069433 - 21069286
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | |||||||||| || | | |||||||| ||  |||||||| | ||| ||||||||||||||||||||||||||||| ||||     
T  21069433 acatcatcacttaacaaaattttttaacggcatatattaaagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacct 21069334  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
     ||| ||| |||||||||||||||| ||| ||||||||||||||||||    
T  21069333 ctgtgacaacgaggtgcagagtcagagactaaagtgactatttgctca 21069286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 40612640 - 40612784
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||||||| ||||||||||  | ||||||||||| ||||||||| | ||||| |  ||| ||||||||||||||||||||||||| |     
T  40612640 atcatcacttaacagatttttttaacgtcaggaattaaagtgataacggaagtgcagagtcaggaaaatatctgtatttaatcctgagtcagggacctac 40612739  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || |||| ||| |||| | |||||||| |||||||||||||||||    
T  40612740 gtgacagtgagctgcaaaatcagggactaaagtgactatttgctc 40612784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9537166 - 9537019
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||| || | || ||||||||||| |||||||||||||||||||||||| | ||| | |||| |||||||||||| || |||||| ||||     
T  9537166 acatcatcacttaccataattatttaacgtcagtgactaaagtgataatggaagtgcacagtcatg-acttctttgtatttaattctaagtcagagacct 9537068  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| ||||||||||||||||| |||||| ||||| || ||||| ||||    
T  9537067 atgtgacagcgaggtgcagagtgagggactaaagtcaccatttgttcaa 9537019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 19183094 - 19182949
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| ||   ||  |||||||||||||| ||||||| | | ||||| ||||||||||||||||||||||||||| ||||     
T  19183094 acatcatcacttaacatatttttttaatcgcaaggactaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacct 19182995  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||| ||||||||||||| ||||| |  | ||||| ||||||||||    
T  19182994 atgtgacagcgaggtgcaaagtcaagttctaaagtaactatttgct 19182949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 32640432 - 32640311
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  |||||  | | | |||||||||||||||||||||||||||| | || ||     
T  32640432 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcct 32640333  T
Q  100 atgtaacagcgaggtgcagagt 121  Q
    |||| |||| ||||||||||||    
T  32640332 atgtgacagtgaggtgcagagt 32640311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 544792 - 544656
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||| ||||||||||| ||||||| || |||||| |||||| | |||| ||||||||| | |||| |||||||||||||||||||||||||||| ||||     
T  544792 acataatcacttaacatatttttttaatgtcagaaactaaatttataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagacct 544693  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgact 138  Q
    || | ||| ||| ||||||||||| ||||||||||||||    
T  544692 atctgaca-cgaagtgcagagtca-ggaccaaagtgact 544656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32641705 - 32641803
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    |||||||||||||||| ||||| |||||||||| || ||||||||||| ||||||||| | ||||  |||||||||||||||||| ||||| |||||||    
T  32641705 acatcatcacttaacatatttttttaacgtcagggattaaagtgataacggaagtgcagagtcagcaacttatttgtatttaatcttgagtaagggacc 32641803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4594080 - 4594174
Alignment:
Q  1 acatcatcacttaacagat-tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcaggga 96  Q
    ||||||||||||||||||| |||||||||| || || ||| ||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||    
T  4594080 acatcatcacttaacagatctttttaacgtaagggattaa-gtgataatggaagtgcagagtcatg-acttatttgtatttaatcctgagtcaggga 4594174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 18400284 - 18400192
Alignment:
Q  50 gaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||||||| | |||| ||||| ||| ||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| |||||||| ||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgaccattt 18400192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 24900411 - 24900462
Alignment:
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24900411 atgtgacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 24900462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 13651173 - 13651245
Alignment:
Q  74 tgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||| ||||| |||| ||||||||||||||||||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacagc-aggtgcacagtcaaggactaaagtgactatttgctca 13651245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 19186199 - 19186344
Alignment:
Q  1 acatcatcacttaacagatt-ttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||| ||||||||||| |||||||| ||  |||||||||||||| |||| || | | |||| ||||| ||||||||||||||| |||||||||||     
T  19186199 acatcatcgcttaacagattgttttaacgacaaggactaaagtgataacggaaatgtagagtcagagacttgtttgtatttaatcctaagtcagggacct 19186298  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||| || | ||| |||||||   | ||| ||| ||||||||||||    
T  19186299 atgtgactgggagatgcagagcatgagactaaaatgactatttgct 19186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28589843 - 28589740
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||| |||||| |||| |||   |  ||||||||||||||  |||||||||||||     
T  28589843 acatcatcacttaacagatttttttaacgtcagagactaaaatggtaacggaagtacaaagtcaaaaatgtatttgtatttaattatgagtcagggacct 28589744  T
Q  100 atgt 103  Q
    ||||    
T  28589743 atgt 28589740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 12445416 - 12445537
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcaga 119  Q
    ||||||||| | |||||||| ||||||| ||||||||| | ||||| |||  ||| |||||||| | || |||| ||||  ||||| |||||||||||||    
T  12445416 tttttaacgccggagactaaggtgataacggaagtgcacattcagg-actactttatatttaattccgaatcagagacctttgtaagagcgaggtgcaga 12445514  T
Q  120 gtcagggaccaaagtgactattt 142  Q
    |||| ||| ||||||||||||||    
T  12445515 gtcaaggatcaaagtgactattt 12445537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 16979136 - 16978996
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| |   ||||||| |||||||||| |||||| | |||| || | | ||||||||||||| ||||||| ||||||||  ||||     
T  16979136 acatcatcacttaacagaataacttaacgttagagactaaaatgataacgtaagtacagagttagggacttatttgcatttaattctgagtcaatgacct 16979037  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactat 140  Q
     |||  |||| ||||||| ||||| |||| |||||||||||    
T  16979036 ttgtggcagcaaggtgcaaagtcaaggactaaagtgactat 16978996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 18004760 - 18004648
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||| ||||||||||||||||||| ||||||||| | |||  ||| | ||||||||||||||| ||  |  |||   ||| |||| ||||||||||||    
T  18004760 tttaacatcagagactaaagtgataacggaagtgcagagtcatagacctctttgtatttaatcctaagctatagacttttgtgacagtgaggtgcagagt 18004661  T
Q  122 cagggaccaaagt 134  Q
    ||||||| |||||    
T  18004660 cagggactaaagt 18004648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40611404 - 40611350
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagt 54  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||    
T  40611404 acatcatcacctaacatatttttttaacgtcagagactaaagtgataagggaagt 40611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 14881056 - 14881010
Alignment:
Q  35 actaaagtgataatggaagtgcaaaatcagggacttatttgtattta 81  Q
    ||||||||||||| ||||||||| | |||||||||||||||| ||||    
T  14881056 actaaagtgataacggaagtgcagagtcagggacttatttgtgttta 14881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 13483174 - 13483218
Alignment:
Q  39 aagtgataatggaagtgcaaaatcagggacttatttgtatttaat 83  Q
    ||||||||| ||||||||||| |||| ||||| ||||||||||||    
T  13483174 aagtgataacggaagtgcaaagtcagagacttgtttgtatttaat 13483218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 44334429 - 44334575
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||| |    
T  44334429 acatcatcacttaacatattttttaatgtcagggactaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggaccta 44334528  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    |||||||||||| |||||| ||||| || ||||||||||||||||||    
T  44334529 tgtaacagcgagctgcagaatcaggaactaaagtgactatttgctca 44334575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 7258419 - 7258272
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||  |||||||| | |||| ||||||||||||||||||||||||| |||||||     
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  7258319 atgtgacaacgaggtgtagagtcagggaccaaagtgactatttgctca 7258272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 48646193 - 48646051
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| | ||||||| |||| |||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||     
T  48646193 acatcatcacttaatatatttttttaacgacagagactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacct 48646094  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  48646093 atgtgacagcgaggtgcatagtcagggaccaaagtgactattt 48646051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 35727842 - 35727693
Alignment:
Q  1 acatcatcacttaacagat-tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||| ||| ||||| | |||| ||||||||| |||||||||||||||||||||||     
T  35727842 acatcatcacttaacagagatttttaacgtcag-gactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacct 35727744  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaa 150  Q
    |||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  35727743 atgtgacagcgaggtgcagagtcagggatcaaagtgactgtttgctcaaaa 35727693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 44333281 - 44333138
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||  |||||  ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||||||     
T  44333281 acatcatcacttaacagatttttttaacgtcaaggacta--gtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacct 44333184  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  44333183 atgtgacagcgaggtgcagagtcagggaccaaagtgactatttgct 44333138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 10899052 - 10899199
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| | |||| |||||||||||||||||||||| |||| ||| |     
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatct 10899151  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||    
T  10899152 atgtgacagcgaggtgcagagtcagggaccaaagtaacaatttactca 10899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 30924988 - 30925130
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||| |    
T  30924988 acatcatcacttaacagattttttaacgtcagagactaaagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggaccta 30925087  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttg 143  Q
    ||| || | ||| |||||| |||||||  ||||||||||||||    
T  30925088 tgtgactgggagctgcagaatcagggattaaagtgactatttg 30925130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 48788651 - 48788797
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| | |||| ||||||||| ||||||||  |||||||||||||     
T  48788651 acatcatcacctaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacct 48788750  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  48788751 atgtgacagcgaggtgcaaagtcaaggatcaaagtgactatttgctc 48788797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 48777401 - 48777252
Alignment:
Q  1 acatcatcacttaacagatttttt--aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    |||||||||||||||| |||||||  |||||||  |||||||||||||| ||||||||| | ||||||| |||||||||||||||| ||||||||||||     
T  48777401 acatcatcacttaacatatttttttaaacgtcatggactaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggact 48777302  T
Q  99 aatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
     |||| |||||||| |||||| |||| ||| |||||||||||||||||||    
T  48777301 tatgtgacagcgagctgcagaatcagagactaaagtgactatttgctcaa 48777252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 42477524 - 42477376
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| |||||||| || |||| |||||| ||||||||| | ||||| ||||||||||||||||||||||||||| ||||     
T  42477524 acatcatcacttaacatatttttttaacgtcagggattaaaatgataacggaagtgcagagtcagg-acttatttgtatttaatcctgagtcagagacct 42477426  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaa 149  Q
    |||  ||| ||||||||||||||| |||||||| ||| ||||||||||||    
T  42477425 atgcgacaacgaggtgcagagtcaaggaccaaattgattatttgctcaaa 42477376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 46286645 - 46286504
Alignment:
Q  3 atcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||| ||||||| ||||  ||||| |||||||||||  |||||||| | |||| |||||||||||||||||||||||||||||||||  |    
T  46286645 atcatcacttaacatatttttttaacggtagagattaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtcagggaccttt 46286546  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttg 143  Q
     |||||||||| || |||||||||||| ||||||||||||||    
T  46286545 ctaacagcgagatgaagagtcagggactaaagtgactatttg 46286504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 48647424 - 48647568
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||   ||||||| | | || ||||||||||||||||||||||||||||||||| ||    
T  48647424 atcatcacttaacagatttttttaacgtcagggactaaagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctat 48647523  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || | |||||| || ||| |||||| | |||||||||||||||||    
T  48647524 gtgatagcgagctgtagaatcagggtctaaagtgactatttgctc 48647568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 43457601 - 43457450
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| |   |||||||||   ||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||     
T  43457601 acatcatcacttaacagaataacttaacgtcatgaactaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacct 43457502  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||  |||||||| |||||| |||||||| ||||||||||||| ||| ||||    
T  43457501 atgcgacagcgagctgcagaatcagggactaaagtgactattttctctaaaa 43457450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 7259663 - 7259805
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | | |||||||||||||||||||||||||||| |||| ||||     
T  7259663 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgaatcagagaccc 7259762  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||| |||||||| | || | |||| ||  |||||||||||||    
T  7259763 atgtgacagcgagctacaaaatcagcgattaaagtgactattt 7259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 8375036 - 8374930
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||||||| ||||||||||||||| ||||||||||||||||  |||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||    
T  8375036 tttaacgtcaaagactaaagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagt 8374937  T
Q  122 cagggac 128  Q
    |||||||    
T  8374936 cagggac 8374930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35729065 - 35729211
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||||||||||| ||||| ||||| ||||| |||||||  ||||||||| | |||| ||||||||||||| ||||||| ||||| |||||     
T  35729065 acatcatcacttaacagatttatttaatgtcagggactacagtgatagcggaagtgcagagtcagtgacttatttgtatgtaatcctaagtcaaggacct 35729164  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| |||||||| |||| | |||||||  |||||||||||||||||    
T  35729165 atgtgacagcgagctgcaaaatcagggaataaagtgactatttgctc 35729211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12223678 - 12223827
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || |||||| |||| ||||||||| |||| |||| |||| | |||||||||| ||| |||||||||||||||||||||||     
T  12223678 acatcatcacttaacagaattatttaacatcagtgactaaagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacct 12223777  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaa 149  Q
    |||| |||  || |||||| ||||||||| |||||||| |||| ||||||    
T  12223778 atgtgacattgatgtgcagtgtcagggactaaagtgaccattttctcaaa 12223827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 45583792 - 45583682
Alignment:
Q  36 ctaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtg 135  Q
    |||||||||||| ||||||||| ||||||| |||||| |||||||||| |||||||||||||| |||| | |||||  |||||| |||||||| ||||||    
T  45583792 ctaaagtgataacggaagtgcagaatcaggaacttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtg 45583693  T
Q  136 actatttgctc 146  Q
    |||||||||||    
T  45583692 actatttgctc 45583682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 8048763 - 8048910
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| ||| || |||||||| | ||| ||||||||||| ||||||||| | || | ||||| ||||||||||||| |||||||| ||||     
T  8048763 acatcatcacttaatagaattatttaacgttaaagattaaagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacct 8048862  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
     |||  ||||||||||||||||||| |   ||||||||||||||||||    
T  8048863 ttgtgtcagcgaggtgcagagtcagagggtaaagtgactatttgctca 8048910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 45584475 - 45584566
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtc 91  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| | |||  | ||||||||||||||||||||||||    
T  45584475 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcattggcttatttgtatttaatcctgagtc 45584566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13578300 - 13578392
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    |||||||||||||||| | || ||||||||||| |||||||||||||| ||||||||| | |||| |||||||||||||||||| |||||||||    
T  13578300 acatcatcacttaacataattatttaacgtcag-gactaaagtgataacggaagtgcagagtcagtgacttatttgtatttaattctgagtcag 13578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 39708213 - 39708100
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    |||||||||||||| ||||||||||| || | ||||| |||||||| |||| ||||||| |||||  ||| || ||||||| ||||||||| ||| ||||    
T  39708213 gactaaagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaag 39708114  T
Q  134 tgactatttgctca 147  Q
    ||||||| ||||||    
T  39708113 tgactatatgctca 39708100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 8375596 - 8375718
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    ||||||| |||||| ||||||||| | ||||  |||| ||||||||||||| ||||||||||||| |||| |||| | |||||  |||||||||| || |    
T  8375596 gactaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgacagtgcggtgcgaagtcagggactaatg 8375695  T
Q  134 tgactatttgctcaaaaagtatt 156  Q
    ||||||||  ||| |||||||||    
T  8375696 tgactattatctctaaaagtatt 8375718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 24844697 - 24844588
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcaga 119  Q
    ||||||||||  ||||||||| |||||||||||||||| | |||  ||||  ||||||||||||||||||| | |||||   || |||||||||||||||    
T  24844697 tttttaacgtttgagactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagttatggaccttggtgacagcgaggtgcaga 24844598  T
Q  120 gtcagggacc 129  Q
    ||||| ||||    
T  24844597 gtcagagacc 24844588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 5930112 - 5930260
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || ||||| | ||| |||||||||||||| ||||||||| | || |  | ||  |||||||||||||||||| |||||||     
T  5930112 acatcatcacttaacagaattatttaatggcagggactaaagtgataacggaagtgcacagtc-gaaaatttcttgtatttaatcctgagttagggacct 5930210  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaa 149  Q
     ||| | ||||| ||||| ||| || ||| |||||||| |||||||||||    
T  5930211 ttgtgatagcgaagtgcaaagtaagagactaaagtgaccatttgctcaaa 5930260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 33607624 - 33607709
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaaca 107  Q
    ||||||||||| | ||||| |||||| ||||||||| |||||| ||||| ||||||||||||||||| |||| ||||  |||||||    
T  33607624 tttaacgtcagggtctaaaatgataacggaagtgcagaatcagagacttctttgtatttaatcctgaatcagagacctttgtaaca 33607709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 8879544 - 8879655
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcaggga-ccaatgtaacagcgaggtgcagag 120  Q
    ||||||||||| ||||||||||||||  ||| |||| | ||||| |||  ||||||||||||||||||||||| | |   | | ||||| ||||||||||    
T  8879544 tttaacgtcagggactaaagtgataacagaaatgcacattcaggaactactttgtatttaatcctgagtcaggaagcttttatgacagctaggtgcagag 8879643  T
Q  121 tcagggaccaaa 132  Q
    ||||||||||||    
T  8879644 tcagggaccaaa 8879655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 21062896 - 21062813
Alignment:
Q  65 ggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||||| | ||||||||||||||||||| |||||  | | ||||||||||||| |||||||||| |||||||| |||| |||||    
T  21062896 ggacttctatgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtcagggactaaagtgaccattttctcaa 21062813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 24934876 - 24934797
Alignment:
Q  72 tttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    ||||||||||||||| |||||| ||||  ||| |||||||  |||||||| ||||||||||||||| |||| ||||||||    
T  24934876 tttgtatttaatcctaagtcagagacctttgtgacagcgatatgcagagttagggaccaaagtgaccatttactcaaaaa 24934797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 44530624 - 44530687
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    |||||||||||||| ||||||||| | |||| ||||||||| |||||||||||||||| |||||    
T  44530624 gactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcggggac 44530687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24288845 - 24288935
Alignment:
Q  1 acatcatcacttaacagattttt-taacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagt 90  Q
    ||||||||| |||||||| || | ||||| |||||| ||||||||||||||||||||| | ||| |||||  |||||| ||||||||||||    
T  24288845 acatcatcagttaacagaattatataacgccagagaataaagtgataatggaagtgcacattcaaggactactttgtaattaatcctgagt 24288935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 19433913 - 19434058
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || ||||||| || |||||||||||||||  |||||||  | || | |||||  || ||||||||||| | |||| ||||     
T  19433913 acatcatcacttaacagaattatttaacgccatagactaaagtgataactgaagtgcggagtcggtgacttccttatatttaatcctaaatcagagacct 19434012  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
     ||| ||| |||| || ||||| |||||| |||||||| |||||||    
T  19434013 ttgtgacaacgagatggagagttagggactaaagtgacaatttgct 19434058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 34704992 - 34704911
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||| ||||| |||||||||||||||||||||| | ||  ||| ||| |||||||||||||| | ||| |||||||||||||    
T  34704992 tcagagacttctttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtgactattt 34704911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 385619 - 385739
Alignment:
Q  29 tcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggac 128  Q
    |||| ||||||| ||||||| |||||||| | |||   |||  |||||||| |||| ||||| |||||||  ||| ||| |||| |||||||||| ||||    
T  385619 tcagggactaaactgataatagaagtgcatattcataaactactttgtattcaatcatgagttagggacctctgtgacaacgagatgcagagtcaaggac 385718  T
Q  129 caaagtgactatttgctcaaa 149  Q
    ||||||||| |||| ||||||    
T  385719 caaagtgaccatttactcaaa 385739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 10894445 - 10894385
Alignment:
Q  49 ggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagc 109  Q
    ||||||||| ||| || ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  10894445 ggaagtgcagaattagagacttatttatatttaatcttgagtcagggacctatgtaacagc 10894385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 44529172 - 44529076
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcaggga 96  Q
    |||||||| ||||||| | || ||||||||||| ||||||||||||||  ||||||   | || | ||||||||||||||||||| |||||||||||    
T  44529172 acatcatcgcttaacaaaattatttaacgtcagggactaaagtgataacagaagtgttgagtcggagacttatttgtatttaatcatgagtcaggga 44529076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33060954 - 33060899
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtg 55  Q
    ||||||||| |||||||| || |||||||||||||||||||||||||| |||||||    
T  33060954 acatcatcatttaacagaattatttaacgtcagagactaaagtgataacggaagtg 33060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 12220166 - 12220073
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagg 94  Q
    |||||||||||||||| | || |||||||||| ||||||||||||||   |||||||| | |||| ||||| ||| ||||||||| |||||||||    
T  12220166 acatcatcacttaacaaaattatttaacgtca-agactaaagtgatatcagaagtgcagagtcagagacttctttctatttaatcttgagtcagg 12220073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 27067904 - 27067788
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||| |||||||||||||||||||||| ||||||| | |||||||||  ||||  |||||||| ||||||| || |  | | ||||||||||||   ||    
T  27067904 tttaatgtcagagactaaagtgataatgaaagtgcacattcagggactactttgcttttaatcc-gagtcagagatctttatgacagcgaggtgc---gt 27067809  T
Q  122 cagggaccaaagtgactattt 142  Q
    ||  |||||||||||||||||    
T  27067808 caaagaccaaagtgactattt 27067788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 27210409 - 27210525
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||| |||||||||||||||||||||| ||||||| | |||||||||  ||||  |||||||| ||||||| || |  | | ||||||||||||   ||    
T  27210409 tttaatgtcagagactaaagtgataatgaaagtgcacattcagggactactttgcttttaatcc-gagtcagagatctttatgacagcgaggtgc---gt 27210504  T
Q  122 cagggaccaaagtgactattt 142  Q
    ||  |||||||||||||||||    
T  27210505 caaagaccaaagtgactattt 27210525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32793315 - 32793229
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcct 86  Q
    ||||||||| |||||| | || ||||||| || |||||||||||||||  ||| |||| |||||  |||||||||||||||||||||    
T  32793315 acatcatcagttaacataattatttaacgccaaagactaaagtgataaccgaaatgcagaatcaatgacttatttgtatttaatcct 32793229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 43461730 - 43461789
Alignment:
Q  23 ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaat 83  Q
    ||||||||||||||||||||||||| ||||||||| | |||   |||||||||||||||||    
T  43461730 ttaacgtcagagactaaagtgataacggaagtgcatagtca-aaacttatttgtatttaat 43461789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 25621722 - 25621821
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||||| ||||||||||||||  |||||||| | |||   ||| |||||||||||||||||| |||   ||| ||||||| | ||| ||||||||    
T  25621722 tttaacgtcagtgactaaagtgataacagaagtgcacattcaaaaactaatttgtatttaatcctgaatcaaaaacctatgtaacggtgagatgcagagt 25621821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6680512 - 6680574
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatc 62  Q
    |||||| ||||||||||| || |||||| ||| |||||||||||||||| |||||||| ||||    
T  6680512 acatcagcacttaacagaattatttaacatcaaagactaaagtgataatagaagtgcataatc 6680574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 21561878 - 21561920
Alignment:
Q  105 acagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    ||||||| |||||||||||||||| |||||||| |||||||||    
T  21561878 acagcgatgtgcagagtcagggactaaagtgaccatttgctca 21561920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 24844576 - 24844544
Alignment:
Q  110 gaggtgcagagtcagggaccaaagtgactattt 142  Q
    |||||||||||||||||||||||||||| ||||    
T  24844576 gaggtgcagagtcagggaccaaagtgaccattt 24844544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 47878463 - 47878608
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||| ||||||||||||| |||||||||  |||||||||||||| ||||||| | | ||||||||||||||||||||||||| ||||||||||||     
T  47878463 acatcatcgcttaacagattttattaacgtcatggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacct 47878562  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgct 145  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  47878563 atgtaacagcgaggtgcagagtcagggatcaaagtgactatttgct 47878608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31844865 - 31844720
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||||||||||| |||| ||| ||| |||||||||| ||||||| | | | |||||||| ||||||||||||||||||||||||||| |    
T  31844865 acatcatcacttaacagatttttaaacgacagtgaccaaagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggaccta 31844766  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||| ||||||||||||||||  |||||| |||||||||||||||||    
T  31844765 tgtgacagcgaggtgcagagctagggactaaagtgactatttgctc 31844720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42278193 - 42278047
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||| | ||||| ||||||||||||||||||| ||||||||||||     
T  42278193 acatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacct 42278094  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| ||||| || |||||| ||| |||| |||||||||||||||||    
T  42278093 atgtgacagcaagctgcagaatcaaggactaaagtgactatttgctc 42278047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 53771035 - 53771176
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||||||||  |||||||||||||| ||||||||| | |||||| ||| |||||||||||| |||||||||||||| |||| ||    
T  53771035 cacttaacagaattatttaacgtcaatgactaaagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgac 53771134  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    | |||||||||||||||||||| |||||||| ||||||||||    
T  53771135 aacgaggtgcagagtcagggactaaagtgaccatttgctcaa 53771176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 47874688 - 47874559
Alignment:
Q  19 ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcag 118  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| | |||||| |||||    
T  47874688 ttttttaacatcag-gactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcag 47874590  T
Q  119 agtcagggaccaaagtgactatttgctcaaa 149  Q
    | |||| ||| ||||||||||||| ||||||    
T  47874589 aatcagagactaaagtgactatttactcaaa 47874559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 39869064 - 39868919
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | || |||||||||||||||||||||||||| ||||||||| | ||  | |||| ||||||||||||  |||||||||||||     
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtc--gaacttgtttgtatttaattatgagtcagggacct 39868967  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
     |||||||||||||||||||||||| ||| ||||| || |||| ||||    
T  39868966 ttgtaacagcgaggtgcagagtcagagactaaagtaacaatttactca 39868919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 4703196 - 4703347
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| ||| || ||||| | |||||||||||||||||| ||||||| | | |||  ||||| |||||||||||| |||||| |||||||     
T  4703196 acatcatcacttaatagaattatttaatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacct 4703295  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| |||||||| || ||||||||  || |||||||| |||||||||||||    
T  4703296 atgtgacagcgagatgtagagtcagtaactaaagtgacaatttgctcaaaaa 4703347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 53770470 - 53770335
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||||| ||||||||| |||||||||||||||||| | |||  ||||| |||||||||||| |||||||||| ||| |||| |     
T  53770470 cacttaacagaattatttaacggcagagactagagtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtgaa 53770371  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactattt 142  Q
     ||||||||||||||||| ||| |||||||| ||||    
T  53770370 tgcgaggtgcagagtcagagactaaagtgaccattt 53770335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 50694893 - 50694793
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||| ||||||  |||||||| ||||||||  ||||||||||||||    
T  50694893 acatcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcagaaacttatttatatttaattttgagtcagggacca 50694794  T
Q  100 a 100  Q
    |    
T  50694793 a 50694793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 54574567 - 54574423
Alignment:
Q  3 atcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||| |||||| |||||| ||| ||||  | ||||||||||| ||||||||| | | | | ||||||||||||||||||||||||||| |||| ||    
T  54574567 atcatcacctaacagttttttttaacatcaggaattaaagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctat 54574468  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || |||||||| |||||||| ||| | |||| |||||||||||||    
T  54574467 gtgacagcgagatgcagagtgaggaagcaaaatgactatttgctc 54574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 26170784 - 26170638
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | |||||||||  ||  |||||||||||||||||||||||| | | ||| |||||||||||||||||| | ||||||  ||      
T  26170784 acatcatcacttaacaaaattttttaacagcatggactaaagtgataatggaagtgcagagtaaggaacttatttgtatttaatcttaagtcagatactt 26170685  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
     ||||||| ||||||||| |||||| ||| ||| | |||||||||||    
T  26170684 ttgtaacaacgaggtgcaaagtcagagactaaactaactatttgctc 26170638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 26685408 - 26685524
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||| |||||||||||||||||||| ||||||||| | ||| |||||| | |||||||||     ||| ||||||| |||| ||    
T  26685408 cacttaacagaattatttaatgtcagagactaaagtgataacggaagtgcatagtcaaggacttctatgtatttaa-----agtgagggacctatgtgac 26685502  T
Q  107 agcgaggtgcagagtcagggac 128  Q
    ||||||||||||||||||||||    
T  26685503 agcgaggtgcagagtcagggac 26685524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 42391885 - 42392016
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaa--atcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgca 117  Q
    ||||||||||| | ||||||| |||||| ||||||||| |  || ||||||| |||||||||||||| |||||||| |||| |||| |||| |||||||     
T  42391885 tttttaacgtctgggactaaactgataaaggaagtgcacattattagggactaatttgtatttaatcatgagtcagagacctatgtgacagtgaggtgcg 42391984  T
Q  118 gagtcagggaccaaagtgactatttgctcaaa 149  Q
    ||||||| ||| |||||||  |||| ||||||    
T  42391985 gagtcagagactaaagtgatcatttactcaaa 42392016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 26172939 - 26173062
Alignment:
Q  18 attttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgca 117  Q
    ||||||||||| ||  |||||||||||||| ||||||||| | |||| ||||||||||||||||||| ||||||| |||||  | | ||||  |||||||    
T  26172939 attttttaacggcatggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggacctttctgacagtaaggtgca 26173038  T
Q  118 gagtcagggaccaaagtgactatt 141  Q
     |||  ||||| ||||||||||||    
T  26173039 tagttggggactaaagtgactatt 26173062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 48740006 - 48740145
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || ||||||||||| ||||||||||||||  |||||||| | |  ||||||| ||||||||||||  ||||||||||| | | || ||    
T  48740006 cacttaacagaattatttaacgtcagggactaaagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgac 48740105  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |  ||||||||||| || |||| |||||||| ||||||||    
T  48740106 aatgaggtgcagagacatggactaaagtgaccatttgctc 48740145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21621967 - 21621861
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||| |||||| | || |||||| |||| |||||||||||||| ||||||||| | |||  ||||  ||||||||||||||||||||||||||||    
T  21621967 acatcatcagttaacataattatttaacatcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcagggacca 21621868  T
Q  100 atgtaac 106  Q
    | |||||    
T  21621867 aagtaac 21621861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 44158587 - 44158502
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||||||||| ||||||||||||||||||||||| |||  ||||||| |||||||||||||| ||| | ||| |||| ||||||||    
T  44158587 tcagggacttctttgtatttaatcctgagtcaggaacctctgtaacaacgaggtgcagagtcgggggctaaattgaccatttgctc 44158502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 21623118 - 21623224
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||| | ||||||||||||||  |||||||| | ||| |||||  ||||||||||||||||| ||||||| || ||| ||| |||| ||||||||    
T  21623118 tttaacgtcggggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctgaatcagggaacattgtgacaacgagatgcagagt 21623217  T
Q  122 cagggac 128  Q
    || ||||    
T  21623218 caaggac 21623224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 4701907 - 4701794
Alignment:
Q  3 atcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||| || |||||| |||| |||||||||||||  ||||||||| | || ||||||| ||||||||||||| | |||||  ||||  |    
T  4701907 atcatcacttaacagaattatttaacatcagggactaaagtgatagcggaagtgcatagtcggggacttctttgtatttaatcataagtcatagaccttt 4701808  T
Q  102 gtaacagcgaggtg 115  Q
    || |||||||||||    
T  4701807 gtgacagcgaggtg 4701794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19050382 - 19050298
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatc 84  Q
    |||||||||||||| ||| || ||||||||| |||||||||||||||| ||||||||| | || | ||||| |||||||||||||    
T  19050382 acatcatcacttaatagaattatttaacgtcggagactaaagtgataacggaagtgcagagtccgagacttctttgtatttaatc 19050298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 19051271 - 19051358
Alignment:
Q  61 tcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| ||||| |||||||||||||  ||||||| ||||  |||  || ||||||| |||||||||||| |||||||| ||||||||||    
T  19051271 tcagagacttctttgtatttaatctcgagtcagtgacctttgtgccaacgaggtgtagagtcagggactaaagtgaccatttgctcaa 19051358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39870653 - 39870777
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||| ||| |||||| || ||||||| | |||||| ||||||||  ||||||||| | |||| || || | ||| ||||||| ||| ||||| ||      
T  39870653 acatcattactcaacagaattatttaacgcctgagactgaagtgatatcggaagtgcagagtcagtgatttctctgtgtttaatcttgactcaggaactt 39870752  T
Q  100 atgtaacagcgaggtgcagagtcag 124  Q
    |||| ||||||||||||||||||||    
T  39870753 atgtgacagcgaggtgcagagtcag 39870777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 32244689 - 32244760
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    ||||||||||| |||||||||||||| ||| ||||| | ||| |||||  ||||| ||||||||||| ||||    
T  32244689 tttaacgtcagggactaaagtgataacggatgtgcacattcaaggactactttgtctttaatcctgaatcag 32244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25810392 - 25810490
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    ||||||||| ||||||||  || ||||||||||||||||||||||||  ||||||||| | |||  | ||  ||||||||||||| ||| | |||||||    
T  25810392 acatcatcagttaacagaagttattaacgtcagagactaaagtgatagcggaagtgcacattcataggctactttgtatttaatcttgaatgagggacc 25810490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 2786330 - 2786273
Alignment:
Q  35 actaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtca 92  Q
    |||||| |||||| ||||||||| | ||| ||| | ||||||||||||||||||||||    
T  2786330 actaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtca 2786273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 9339790 - 9339639
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| | || |||| ||||||||||||||||||||||||||||||     
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||||||| |||| |||||| |||||||| |||| |||||||||||||||||    
T  9339690 atgtaacaacgagctgcagaatcagggactaaagggactatttgctcaaaaa 9339639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 7945533 - 7945681
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||| || ||||| |||||||||| |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| |||     
T  7945533 acatcatcacttagcatatttttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacct 7945632  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  7945633 atgtgacagcgaggtgcagagtcagggaccaaaatgattatttgctcaa 7945681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9341004 - 9341155
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||     
T  9341004 acatcatcacttaatagatttttttaacgtcagagactaaagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtcagggacct 9341103  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| | || ||| |||||| | |  || |||||||||||||||||||||||    
T  9341104 atgtgatagtgagatgcagaataaatgatcaaagtgactatttgctcaaaaa 9341155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 10333165 - 10333315
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||| |||||||| ||||     
T  10333165 acatcatcacttaacagatttttttaacgctagagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacct 10333264  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaa 150  Q
    ||||||||||||| |||||| |||| ||  | |||||||||||||||||||    
T  10333265 atgtaacagcgagctgcagaatcagagattatagtgactatttgctcaaaa 10333315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 32665749 - 32665895
Alignment:
Q  1 acatcatcacttaacagattttt-taacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||| | |||  ||||||||||||||||||| |||||||| ||||     
T  32665749 acatcatcacttaacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacct 32665848  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| |||||||| |||||| |||||||| |||||||||||||||||    
T  32665849 atgtgacagcgagctgcagaatcagggactaaagtgactatttgctc 32665895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 5782536 - 5782412
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||| |||||||| |||| |||| |||||||||||||||||    
T  5782536 tttaacgtcagagactaaagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagt 5782437  T
Q  122 cagggaccaaagtgactatttgctc 146  Q
    ||||||| ||| |||| ||||||||    
T  5782436 cagggactaaaatgacaatttgctc 5782412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 52440539 - 52440686
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | |||| ||||||||| ||||||||||||| |||||||||     
T  52440539 acatcatcacttaacacatttttttaacgtca-agactaaagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacct 52440637  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||| ||||||| ||||| |||||| |||||| |||| |||||||||||    
T  52440638 atgtgacagcgatgtgcaaagtcagagaccaatgtgattatttgctcaa 52440686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 10333128 - 10332984
Alignment:
Q  3 atcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||||||||| |||||||  ||||||| |||||| ||||||||| | | |||||||||||| ||||||||||||| ||| ||||| ||    
T  10333128 atcatcacttaacagatttttttaacgtcaaggactaaaatgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctat 10333029  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || ||| ||||||||| |||||||||| |||||||||||||||||    
T  10333028 gtgacaacgaggtgcaaagtcagggactaaagtgactatttgctc 10332984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 6612563 - 6612420
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||| ||||||||||| | || ||||||||||| || ||||||||||||||||||||| | |||| ||||| ||||||||||||| |||||||| |||      
T  6612563 acataatcacttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacat 6612464  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttg 143  Q
     | |||||||||||||||||||||||||| ||||||||||||||    
T  6612463 ttataacagcgaggtgcagagtcagggactaaagtgactatttg 6612420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 52439619 - 52439477
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||| |    | ||||||| |||||||||||||||| ||| ||||     
T  52439619 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaaatgcaga----gagacttatctgtatttaatcctgagccagagacct 52439524  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| |||||||| |||||| |||||| | |||||||||||||||||    
T  52439523 atgtgacagcgagctgcagaatcaggggctaaagtgactatttgctc 52439477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 22856824 - 22856676
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||| ||||||||||| | || ||||||||| |||||||||||||||| ||||||||| | | || ||||| ||||||||||||||||||||| | | |     
T  22856824 acataatcacttaacataattatttaacgtcggagactaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaagaatct 22856725  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
     ||||||| || ||||||||||||| ||| |||||||| ||||||||||    
T  22856724 ttgtaacaacgtggtgcagagtcagtgactaaagtgaccatttgctcaa 22856676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 7944294 - 7944150
Alignment:
Q  6 atcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgta 104  Q
    ||||||||||| ||||||| ||||| || ||||||| |||||| | ||||||| | ||| |||||||||||||||||||  ||||||||||||| ||||     
T  7944294 atcacttaacatatttttttaacgttagggactaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtg 7944195  T
Q  105 acagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||||||| |||| | ||||||||   |||||||||||||| |||||    
T  7944194 acagcgagttgcaaaatcagggac--tagtgactatttgctaaaaaa 7944150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 32664647 - 32664510
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||||  ||| |||||||||  |||||||||||||| |||||||||        || |||||||||||||||||||||||| | ||| |    
T  32664647 acatcatcacttaacaattttcttaacgtcaaggactaaagtgataacggaagtgca--------gagttatttgtatttaatcctgagtcaag-accta 32664557  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    | ||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  32664556 tataacagcgaggtgcagagtgaggaaccaaattgagtatttgctca 32664510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 11060766 - 11060910
Alignment:
Q  4 tcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatg 102  Q
    |||||| |||||||| || ||||||||| | |||||||||||||| | ||||||  | |||||||||  ||||||||||||  ||||||| |||||  ||    
T  11060766 tcatcagttaacagaattatttaacgtcggggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttg 11060865  T
Q  103 taacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    | ||||||||||||| ||||| ||| ||||||||| |||| ||||    
T  11060866 tgacagcgaggtgcatagtcaaggatcaaagtgaccatttactca 11060910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 8975281 - 8975161
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||| || ||||||||||||||| | ||||||| | ||| |||||  ||| ||||||||| |||||||||||||  ||| ||| | ||||||| |||    
T  8975281 tttaacgccaaagactaaagtgataacgaaagtgcatattcatggactactttatatttaatcttgagtcagggacctttgtgacaacaaggtgcaaagt 8975182  T
Q  122 cagggaccaaagtgactattt 142  Q
     ||||||||||||||| ||||    
T  8975181 tagggaccaaagtgaccattt 8975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 5783095 - 5783205
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || |||||||  || |||||||||||||| ||||||||| | ||| |||||| |||||||||||| |||||||  ||| | |||| ||    
T  5783095 cacttaacagaattatttaacgctagtgactaaagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtcgaggatctatgtgac 5783194  T
Q  107 agcgaggtgca 117  Q
    |||||||||||    
T  5783195 agcgaggtgca 5783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6613957 - 6614051
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagag-actaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcag 93  Q
    |||||||||||||||| | || ||||||||| ||| |||||| ||||||  |||||||| | |||| ||||||||||||||||||||||||||||    
T  6613957 acatcatcacttaacaaaattatttaacgtcggaggactaaaatgataactgaagtgcagagtcagagacttatttgtatttaatcctgagtcag 6614051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 534601 - 534682
Alignment:
Q  65 ggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||||| ||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||  || ||| |||||||||||||    
T  534601 ggacttgtttgtatttaatcctgaatcaagaacctatgtaacagcgaggtgcagagccagaaacaaaaatgactatttgctc 534682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 3117793 - 3117642
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||| |||||| | || |||||| |||||  |||||||||||| ||||||| | | |||| || || ||||||||||||| |||||||| ||||     
T  3117793 acatcatcaattaacaaaattatttaacttcagacgctaaagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcagagacct 3117694  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
     ||| | | ||| ||| ||||| |||||| ||| ||||||||||||| ||||    
T  3117693 ttgtgataacgatgtgaagagttagggactaaaatgactatttgctctaaaa 3117642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 44720850 - 44720895
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcaggga 67  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  44720850 tttaacgtcagagactaaagtgataatggaagtgcacattcaggga 44720895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 25038020 - 25037925
Alignment:
Q  2 catcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    ||||||||||||||| | || | || ||| || ||||||||||||| | |||| || | |||| ||||| ||||||||||||| ||||||||||||    
T  25038020 catcatcacttaacataattatcaatgtcggaaactaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25037925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 25043232 - 25043137
Alignment:
Q  2 catcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggac 97  Q
    ||||||||||||||| | || | || ||| || ||||||||||||| | |||| || | |||| ||||| ||||||||||||| ||||||||||||    
T  25043232 catcatcacttaacataattatcaatgtcggaaactaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 17589681 - 17589754
Alignment:
Q  62 cagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtg 135  Q
    ||||||||  ||||||||| |||| |||| || ||||| |||  |||||||||||| |||||||||||||||||    
T  17589681 cagggactattttgtattttatccggagttagagaccattgtgtcagcgaggtgcaaagtcagggaccaaagtg 17589754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 34088449 - 34088591
Alignment:
Q  2 catcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||| | || ||||| ||||  || |||||||||| |||||||||| | |||| ||||| ||||||||||||| |        ||||      
T  34088449 catcatcacttaacataattatttaatgtcaaggattaaagtgatagtggaagtgcagagtcagagacttctttgtatttaatcat--------gacctt 34088540  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    ||| |||||||| || |||||||||||| |||||||| ||||||| |||||    
T  34088541 tgtgacagcgagatgtagagtcagggactaaagtgacaatttgcttaaaaa 34088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 44020088 - 44019979
Alignment:
Q  42 tgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatt 141  Q
    |||||| | ||||||| | |||| ||||| ||| ||||||||| |||||||| |||   ||| ||| |||| |||| |||||||||||||||| |  |||    
T  44020088 tgataacgtaagtgcagagtcagagacttctttatatttaatcttgagtcagagacttttgtgacaacgagttgcaaagtcagggaccaaagtaatcatt 44019989  T
Q  142 tgctcaaaaa 151  Q
    ||||||||||    
T  44019988 tgctcaaaaa 44019979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 50107216 - 50107333
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    |||||||||||||| ||||||||| | |||| ||||  ||||||||||||||||| ||||  |||  ||| | | |  |||||||| |||| ||||||||    
T  50107216 gactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctgaatcagtaacctttgtgataacatggtgcagaatcagagaccaaag 50107315  T
Q  134 tgactatttgctcaaaaa 151  Q
    |||| | || ||||||||    
T  50107316 tgaccagttactcaaaaa 50107333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22857558 - 22857617
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaa 59  Q
    |||||||||||||||| | || ||||||||||  |||||||||||||| |||||||||||    
T  22857558 acatcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaa 22857617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33342560 - 33342513
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataa 47  Q
    |||||||||||||||| | || ||||||||||||||||||||||||||    
T  33342560 acatcatcacttaacataattatttaacgtcagagactaaagtgataa 33342513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 1001265 - 1001164
Alignment:
Q  33 agactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaa 132  Q
    |||||||| ||||||  |||||||| | |||| ||||  |||||||||||||| |||||| |||||  |||  || ||||||||| ||||| |||| |||    
T  1001265 agactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatggactaaa 1001166  T
Q  133 gt 134  Q
    ||    
T  1001165 gt 1001164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 2923860 - 2923921
Alignment:
Q  85 ctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||||||||||||||  ||| | ||||||||||| ||| ||| || |||||||||||||||||    
T  2923860 ctgagtcagggacctttgtgatagcgaggtgcaaagttaggaactaaagtgactatttgctc 2923921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 52318297 - 52318443
Alignment:
Q  2 catcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||   |||||||| | |||||||||||||||||||||||||||||||||||| | |    
T  52318297 catcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatcta 52318396  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    ||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  52318397 tgtgacagcgaagtgcagagtcagagaccaaagtgactatttgctca 52318443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 48573129 - 48572978
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||| ||||||| ||||||| |||||||  |||||||||||||| ||||||||| | |||| | |||||||||||||||||||||||||||||||     
T  48573129 acatcatcgcttaacaaatttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacct 48573030  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||| | | ||||||||||||||||||||||||||||||||||||| |||||    
T  48573029 atgtgataacgaggtgcagagtcagggaccaaagtgactatttgctaaaaaa 48572978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 17700663 - 17700511
Alignment:
Q  1 acatcatcacttaacagatttttt--aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    ||||||||  ||||||||||||||  |||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||    
T  17700663 acatcatcgtttaacagattttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacc 17700564  T
Q  99 aatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
     |||| ||| |||||||||||||||  ||| ||||||||||||||||| ||||    
T  17700563 tatgtgacaacgaggtgcagagtcaaagactaaagtgactatttgctctaaaa 17700511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 55388217 - 55388070
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||| || |||||| | ||||  ||||||||||||||||||||||||||| ||||     
T  55388217 acatcatcacttaacaaatttttttaacgtcagggactaaagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacct 55388118  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    || | |||||||| |||||| |||||||| ||||||||||||||||||    
T  55388117 atatgacagcgagctgcagaatcagggactaaagtgactatttgctca 55388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34263949 - 34263803
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||| ||||||| ||||||| || ||||| || ||||||||||||||||||| | | |||| ||||||||||||||||||||||| ||| |||||     
T  34263949 acatcatcccttaacatatttttttaatgtcagggattaaagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacct 34263850  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
     ||| |||||||||||||||||||||| |||||||||||||||||||    
T  34263849 ctgtgacagcgaggtgcagagtcaggggccaaagtgactatttgctc 34263803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 17701897 - 17702045
Alignment:
Q  1 acatcatcacttaacagatttt--ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacc 98  Q
    ||||| ||| ||||||||||||  |||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  17701897 acatcgtcatttaacagattttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacc 17701996  T
Q  99 aatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
     || | |||||||| |||||| |||| ||| ||||||||||||| ||||    
T  17701997 tatatgacagcgagctgcagaatcagagactaaagtgactatttactca 17702045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 36279096 - 36278950
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| ||| |||||||||||||| ||||||| |||||| ||||||||| | |||| ||||||||||||||||||||||| |||||||||     
T  36279096 acatcatcacttaaaagaattttttaacgtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacct 36278997  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||| ||| |||| || | | |||||||| |||||||||||||||||    
T  36278996 atgtgacaacgagctgtataatcagggactaaagtgactatttgctc 36278950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 2591769 - 2591625
Alignment:
Q  3 atcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaat 101  Q
    |||||||||||||||| |   ||||| |||| |||||||||||| ||||||||||| | |||| ||||| ||||||||||||||||||||||||||| ||    
T  2591769 atcatcacttaacagaataacttaacatcagggactaaagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctat 2591670  T
Q  102 gtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || ||||| || |||||| |||||||| |||||||||||||||||    
T  2591669 gtgacagcaagctgcagaatcagggactaaagtgactatttgctc 2591625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 55389448 - 55389592
Alignment:
Q  1 acatcatcacttaacagattttt-taacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||| || ||||||  | |||||||||||||| ||||||| | | ||||||||||| |||||||||||  |||||||  ||||     
T  55389448 acatcatcacttaacatattgttgtaacgttggggactaaagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacct 55389547  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgc 144  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  55389548 atgtgacagcgaggtgcagagttagggaccaaagtgactatttgc 55389592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 2592014 - 2592133
Alignment:
Q  28 gtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcaggga 127  Q
    ||||| |||||||||||||| ||||||    | |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| | |||||    
T  2592014 gtcagggactaaagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattaggga 2592113  T
Q  128 ccaaagtgactatttgctca 147  Q
    | ||||||||||||||||||    
T  2592114 ctaaagtgactatttgctca 2592133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 19114655 - 19114528
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||||| ||||||||||||||||| ||||||||||| | || ||||| ||||||||||||| |||||||||||||  ||| ||| ||| |||||||||    
T  19114655 tttaacgtaagagactaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagt 19114556  T
Q  122 cagggaccaaagtgactatttgctcaaa 149  Q
    ||||||| |||||||  |||||||||||    
T  19114555 cagggactaaagtgatcatttgctcaaa 19114528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 45600925 - 45601063
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || |||||||||   |||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||| ||||||||| |||| ||    
T  45600925 cacttaacagaattatttaacgtcgtggactaaagtgataacggaagtgcagagtcagg-acttctttgtatttaatcctgaatcagggacctatgtgac 45601023  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    |||||||  ||||||||||||| |||||||| ||||||||    
T  45601024 agcgagggacagagtcagggactaaagtgacgatttgctc 45601063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 33428448 - 33428561
Alignment:
Q  34 gactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaag 133  Q
    ||||||||||| || |||| |||| | ||| |||||| |||||||||||| |||||||||||||| |||| ||| |||||||||||||||||||| ||||    
T  33428448 gactaaagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggacgaaag 33428547  T
Q  134 tgactatttgctca 147  Q
    |||| |||||||||    
T  33428548 tgaccatttgctca 33428561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 47118052 - 47118177
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||||||| |||||||||||||| | ||||||| | |||| ||||| |||| ||||||||||||||| |||||  || | ||| |||||||||||||    
T  47118052 tttaacgtcagggactaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcggggacttatatgacaacgaggtgcagagt 47118151  T
Q  122 cagggaccaaagtgactatttgctca 147  Q
    ||||||| |||||||| |||||||||    
T  47118152 cagggactaaagtgaccatttgctca 47118177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 50753961 - 50753820
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||  |||||| | | ||||  |||| ||| ||||||||||||| | |||||||     
T  50753961 acatcatcacttaacagatttttttaacggcagggactaaagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacct 50753862  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatt 141  Q
    |||| ||||||||||||||||  |||||| ||||||||||||    
T  50753861 atgtgacagcgaggtgcagagctagggactaaagtgactatt 50753820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 20464213 - 20464069
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||| || |||||||||   ||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||| ||||||||     
T  20464213 acatcatcacttaacagagttatttaacgtcgtggactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacct 20464114  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgc 144  Q
     ||| ||| |||||||||||||| ||||| |||||| | ||||||    
T  20464113 ttgtgacaacgaggtgcagagtcggggactaaagtgtccatttgc 20464069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 47075352 - 47075480
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||||||||||||||||||||||| ||||||| | | ||||||  || ||||||||||||| ||||| | ||||| |||| ||| |||||||||||||    
T  47075352 tttaacgtcagagactaaagtgataacggaagtgtagagtcaggggtttctttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagt 47075451  T
Q  122 cagggaccaaagtgactatttgctcaaaa 150  Q
    || |||  |||||||| ||||||||||||    
T  47075452 caaggattaaagtgaccatttgctcaaaa 47075480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 53959079 - 53959187
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | ||| | |||||||||||||||||| |||||||| ||||     
T  53959079 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacct 53959178  T
Q  100 atgtaacag 108  Q
    |||| ||||    
T  53959179 atgtgacag 53959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 36280296 - 36280399
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||| | |||| ||||||||| |||||||||||||||||| ||||     
T  36280296 acatcatcacttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagagacct 36280395  T
Q  100 atgt 103  Q
    ||||    
T  36280396 atgt 36280399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 48574438 - 48574548
Alignment:
Q  1 acatcatcacttaacagatttt-ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    ||||||||| |||| ||||||| |||||||||  |||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||     
T  48574438 acatcatcatttaaaagatttttttaacgtcaaggactaaagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 48574537  T
Q  100 atgtaacagcga 111  Q
    | ||||||||||    
T  48574538 a-gtaacagcga 48574548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 48808505 - 48808359
Alignment:
Q  6 atcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgta 104  Q
    ||||||||||| ||||||| ||| || | ||||||||||| || ||||||||| | | ||| ||||||||||||||||||||||||||| |||| || ||    
T  48808505 atcacttaacatatttttttaacatccgggactaaagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagacctatcta 48808406  T
Q  105 acagcgaggtgcagagtcagggac--caaagtgactatttgctcaaa 149  Q
    |||||||| |||||| ||||||||   ||||||| ||||||||||||    
T  48808405 acagcgagctgcagaatcagggactataaagtgattatttgctcaaa 48808359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 52317123 - 52316977
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||  ||||||| |||||| ||| ||||| | | |  ||||||||||||||||||| |||||||| ||||     
T  52317123 acatcatcacttaacagatttttttaacgtcatggactaaaatgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacct 52317024  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    || | |||||||| |||||| |||| ||| ||||||| |||||||||    
T  52317023 atatgacagcgagctgcagaatcagagactaaagtgattatttgctc 52316977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 53957817 - 53957673
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||||||||||| |||||||| ||  ||| || ||| ||||||||| | |||  |||||||||||||||| |||||||||||| |||     
T  53957817 acatcatcacttaacagatttttttaacgtcagggaa-aaattgttaagggaagtgcagagtcatagacttatttgtattta-tcctgagtcaggaacct 53957720  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    ||||||||||||| |||||| ||| | || |||||||||||||||||    
T  53957719 atgtaacagcgagttgcagaatcaagtactaaagtgactatttgctc 53957673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 11773053 - 11773142
Alignment:
Q  23 ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgag 112  Q
    |||||| ||| |||||||||||||| ||||||| | | |||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  11773053 ttaacgccagggactaaagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 19115133 - 19115271
Alignment:
Q  8 cacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaac 106  Q
    ||||||||||| || |||||||| || ||||||||| | || ||||||||| | ||| | |||| ||||||||||||||||||| | ||||| |||| ||    
T  19115133 cacttaacagaattatttaacgttagggactaaagtaaaaacggaagtgcagagtcatg-acttctttgtatttaatcctgagtgaaggacctatgtgac 19115231  T
Q  107 agcgaggtgcagagtcagggaccaaagtgactatttgctc 146  Q
    | ||||||||||||||| | || |||||||||||||||||    
T  19115232 atcgaggtgcagagtcacgaactaaagtgactatttgctc 19115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 3671182 - 3671033
Alignment:
Q  1 acatcatcacttaacaga-ttttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | |||||||||| ||| || ||||||||||| ||||||| | | |||  |||||||||||||||||| ||||||||| ||||     
T  3671182 acatcatcacttaacataattttttaacggcagggattaaagtgataacggaagtggagagtcatagacttatttgtatttaattctgagtcagagacct 3671083  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaa 150  Q
     ||| | || |||||||| ||||| |||  ||||||||||| |||||||||    
T  3671082 ttgtgatagagaggtgcaaagtcaagga-taaagtgactatatgctcaaaa 3671033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 19331183 - 19331101
Alignment:
Q  69 ttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 151  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || ||||||  |||||| |||||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaacgaaagtggttatttggtcaaaaa 19331101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 49261539 - 49261659
Alignment:
Q  23 ttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtc 122  Q
    ||||||||||||||||||||||||| |||| |||| | | || |||   ||||||||||||||||||||||||||| |||| ||| | | |||  || |     
T  49261539 ttaacgtcagagactaaagtgataacggaaatgcagagttagagac---tttgtatttaatcctgagtcagggacctatgtgacaacaatgtgtggaatt 49261635  T
Q  123 agggaccaaagtgactatttgctc 146  Q
    | |||| |||||||||||||||||    
T  49261636 atggactaaagtgactatttgctc 49261659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 26652655 - 26652731
Alignment:
Q  72 tttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    ||||||||| ||||| |||||||||| || || |||||||| |||| ||||||||||| |||||||||||| |||||    
T  26652655 tttgtattttatcctaagtcagggactaaagtgacagcgagatgcaaagtcagggacccaagtgactatttactcaa 26652731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 48809634 - 48809690
Alignment:
Q  1 acatcatcacttaacagattttttaacgtcagagactaaagtgataatggaagtgca 57  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  48809634 acatcatcacttaacagatttttttacgtcatggactaaagtgataacggaagtgca 48809690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 36827454 - 36827546
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtca 92  Q
    |||||||||||||||| | || |||||| ||||||||||||||||||| ||||||| | | |||| || |  ||| |||||||||||||||||    
T  36827454 acatcatcacttaacaaaattatttaacatcagagactaaagtgataacggaagtgtacattcagagattattttatatttaatcctgagtca 36827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 47427953 - 47427887
Alignment:
Q  51 aagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgca 117  Q
    ||||||| | |||||||||| ||||||||||||  ||||||| ||||| |||| |||||||||||||    
T  47427953 aagtgcacagtcagggacttctttgtatttaattttgagtcaaggacctatgtgacagcgaggtgca 47427887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 27204165 - 27204202
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgca 57  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  27204165 tttttaacgtcagggactaaactgataatggaagtgca 27204202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 612358 - 612226
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | || ||||| || ||  |||||||||||||   |||| || | ||| |||||| ||||||||||||  ||| ||  ||| |     
T  612358 acatcatcacttaacataattatttaatgtgaggaactaaagtgataacataagtacacattcacggacttctttgtatttaattttgaatcgaggatct 612259  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaa 132  Q
     ||||||| ||||||||| ||||||||||||||    
T  612258 ttgtaacaacgaggtgcatagtcagggaccaaa 612226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 30748143 - 30747996
Alignment:
Q  1 acatcatcacttaacagatttttt-aacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| || |||||| |||| ||| |||||||||||||| | ||||| | | |||| ||||| ||||||||||||||| |||||||||||     
T  30748143 acatcatcacttaatagttttttttaacggcagcgactaaagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacct 30748044  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctca 147  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  30748043 atgtgacagcgaggtgcagaatcagggactaaagtgactatttgctca 30747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 31219077 - 31218951
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||| |||| || ||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  31219077 tttaacatcagggattaaagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagt 31218978  T
Q  122 cagggaccaaagtgactatttgctcaa 148  Q
    ||| ||  |||||||| ||||||||||    
T  31218977 cagagattaaagtgaccatttgctcaa 31218951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 31219161 - 31219281
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    |||||||||||||||||||||||||| |||||||   | ||||| |||| ||||||||||||||||||| |  |||| |||| |||||||||||||||||    
T  31219161 tttaacgtcagagactaaagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagt 31219260  T
Q  122 cagggaccaaagtgactattt 142  Q
    ||||||  |||||||| ||||    
T  31219261 cagggattaaagtgaccattt 31219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 23508070 - 23507947
Alignment:
Q  22 tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagt 121  Q
    ||||||| ||| |||||||||||||| ||||||| ||| |||  || || ||||||||||||||||| ||||| ||| |||| |||| |||||| ||||     
T  23508070 tttaacgacagggactaaagtgataaaggaagtgtaaagtcatagatttgtttgtatttaatcctgaatcaggaacctatgtgacagggaggtgtagag- 23507972  T
Q  122 cagggaccaaagtgactatttgctc 146  Q
    ||| ||| |||||||||||||||||    
T  23507971 cagagactaaagtgactatttgctc 23507947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 5265339 - 5265201
Alignment:
Q  4 tcatcacttaacagat-tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatg 102  Q
    |||||| ||||||||| ||||||||||||| ||||||| |||||| ||||||||| | |||  | || ||||| |||||||| ||| |||| ||||| ||    
T  5265339 tcatcaattaacagatgtttttaacgtcag-gactaaactgataacggaagtgcacattcaaaggctaatttgcatttaatcttgaatcagagaccattg 5265241  T
Q  103 taacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    ||||| ||||||||||| ||| | || ||| |||||||||    
T  5265240 taacaacgaggtgcagaatcaagaactaaaatgactattt 5265201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 12676469 - 12676591
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcaga 119  Q
    ||||||| | ||||||||||| ||||||   ||||||| | | || ||||  |||||||||||||||||| ||| ||||| ||| ||| |||||||||||    
T  12676469 tttttaatgccagagactaaactgataacaaaagtgcacatttagagactactttgtatttaatcctgagacagagaccattgtgacaacgaggtgcaga 12676568  T
Q  120 gtcagggaccaaagtgactattt 142  Q
    |||||  | ||||||||||||||    
T  12676569 gtcagatatcaaagtgactattt 12676591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 3778790 - 3778915
Alignment:
Q  17 gattttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgc 116  Q
    ||||||||||||||||||| |||| || |||  |||||||| |  ||||||||  ||||||||||| ||||| |||| | |   ||| | ||||| ||||    
T  3778790 gattttttaacgtcagagattaaactggtaacagaagtgcacatccagggactactttgtatttaagcctgattcagtggcatttgtgatagcgaagtgc 3778889  T
Q  117 agagtcagggaccaaagtgactattt 142  Q
    | ||||||||| ||||||||| ||||    
T  3778890 aaagtcagggatcaaagtgaccattt 3778915  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 6468811 - 6468908
Alignment:
Q  51 aagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    ||||||| | |||| ||||  ||||||||||||| |||||||||||||  ||| |||||||  ||||||||||  || ||||||||| |||| |||||    
T  6468811 aagtgcacattcagagactattttgtatttaatcatgagtcagggacctttgtgacagcgatatgcagagtcaaagaacaaagtgaccatttactcaa 6468908  T

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Target: scaffold0034 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 116170 - 116054
Alignment:
Q  29 tcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggac 128  Q
    |||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| | ||| ||    
T  116170 tcagggactaaagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaac 116071  T
Q  129 caaagtgactatttgct 145  Q
     ||||||||||||||||    
T  116070 taaagtgactatttgct 116054  T

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Target: scaffold0039 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 79217 - 79073
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||||| | || |||||||||| ||||||||||||||  ||| ||||||| ||| |||||| ||| ||||||||| ||||||| |||||     
T  79217 acatcatcacttaacaaaattatttaacgtcaaagactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacct 79118  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgc 144  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||    
T  79117 atgtgacagcgaggtgcagagtcaggaactaaattgactatttgc 79073  T

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Target: scaffold0039; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 79662 - 79810
Alignment:
Q  1 acatcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggacca 99  Q
    |||||||||||||| | | || |||||||||| |||||||| ||||||| ||| |||| | |||  ||||| ||||||||||||| ||||||||| ||      
T  79662 acatcatcacttaataaaattatttaacgtcaaagactaaaatgataatagaaatgcagagtcaaagacttctttgtatttaatcatgagtcaggaactt 79761  T
Q  100 atgtaacagcgaggtgcagagtcagggaccaaagtgactatttgctcaa 148  Q
    |||||||| |||||||| ||||||||||  |||||||||||||||||||    
T  79762 atgtaacaacgaggtgccgagtcagggattaaagtgactatttgctcaa 79810  T

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Target: scaffold0039; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 74357 - 74433
Alignment:
Q  65 ggacttatttgtatttaatcctgagtcagggaccaatgtaacagcgaggtgcagagtcagggaccaaagtgactatt 141  Q
    |||||| ||||||||||||| ||||| ||||||| |||| |||| ||| ||||||||||||||| ||| ||||||||    
T  74357 ggacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaactgactatt 74433  T

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Target: scaffold0767 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 5742 - 5601
Alignment:
Q  2 catcatcacttaacagattt-tttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcctgagtcagggaccaa 100  Q
    ||||||||| ||||| | || ||||||| |||||||||||||||||| ||||||| | | |||||||||| |||||||||||| ||||||||| |||       
T  5742 catcatcacataacataattatttaacgccagagactaaagtgataacggaagtgtagagtcagggacttctttgtatttaattctgagtcagagacatt 5643  T
Q  101 tgtaacagcgaggtgcagagtcagggaccaaagtgactattt 142  Q
    ||| ||| ||||||||| ||| || ||| |||||||| ||||    
T  5642 tgtcacaacgaggtgcaaagtgagtgactaaagtgacaattt 5601  T

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Target: scaffold0369 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 9135 - 9201
Alignment:
Q  20 tttttaacgtcagagactaaagtgataatggaagtgcaaaatcagggacttatttgtatttaatcct 86  Q
    ||||||||||||||||||||| ||||||   ||||||||| |||| ||||  |||||||||||||||    
T  9135 tttttaacgtcagagactaaactgataacaaaagtgcaaattcagagactattttgtatttaatcct 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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