View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_2D_low_5 (Length: 602)
Name: NF5139_2D_low_5
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_2D_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 151 - 598
Target Start/End: Complemental strand, 45767682 - 45767234
Alignment:
| Q |
151 |
taaaattattgtttttcactttatatggaaatatattattcatgatggaccaaagtaataatttgttgtttgagatccatgcttgtatgcttg-atagat |
249 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45767682 |
taaaattatttcttttcactttatatgtaaatatattattcatgatggaccaaagtaataatttgttgtttgagatccatgcttgtatgcttggatagat |
45767583 |
T |
|
| Q |
250 |
atagttggataataattagaattaattcaatattgtttatgattgctaagttagttatgatcagtgagaagttatatatagtggattctacaatcattgt |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45767582 |
atagttggataataattagaattaatacaatattgttaatgattgctaagttagttatgatcagtgagaagttatatatagtgtattctacaatcattgt |
45767483 |
T |
|
| Q |
350 |
atatatcaacttcttcattctattaattctgaaatatgaaatgtgtacacattagtcctgagtcctaactcgactaatagagtaactaacactaccagga |
449 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45767482 |
at----caacttcttcattctattaattctgaaatatgaaatgtgtacacattagtcctgagtcctaactcgactaatagagtaactaacactaccagga |
45767387 |
T |
|
| Q |
450 |
ttataactattaatcataaacagaacatttgtttaaagtcagtgtac----tattactcactatttggagatgtccaagagtcatttcgtgtgactcaac |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45767386 |
ttataactattaatcataaacagaacatttgtttaaagtcagtgtactatttattactcactatttggagatgtccaagagtcattttgtgtgactcaac |
45767287 |
T |
|
| Q |
546 |
atttcgtactaaatagtaccctgtcatgttgtcgtatatattgatgatgtcca |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45767286 |
atttcgtactaaatagtaccctgtcatgttgtcgtatatattgatgatgtcca |
45767234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 45767876 - 45767770
Alignment:
| Q |
19 |
catggttcgaattgtgactcacatggaattaatatctagccccttc---ataccaacggataaggttaccctaaagagtttttcttcaaagtgactaagt |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45767876 |
catggtttgaattgtgactcacatggaattaatatctagccccttcttcataccaacggataaggttaccctaaagagtttttcttcaaagtgactaagt |
45767777 |
T |
|
| Q |
116 |
tatactt |
122 |
Q |
| |
|
||||||| |
|
|
| T |
45767776 |
tatactt |
45767770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University