View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5139_2D_low_9 (Length: 452)

Name: NF5139_2D_low_9
Description: NF5139_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5139_2D_low_9
NF5139_2D_low_9
[»] chr2 (4 HSPs)
chr2 (109-435)||(32212616-32212941)
chr2 (10-92)||(32213474-32213556)
chr2 (239-281)||(18962127-18962169)
chr2 (241-281)||(5045248-5045288)
[»] chr4 (4 HSPs)
chr4 (241-284)||(21193934-21193977)
chr4 (18-73)||(25228235-25228289)
chr4 (239-270)||(30770833-30770864)
chr4 (241-281)||(8422928-8422968)
[»] chr8 (2 HSPs)
chr8 (239-281)||(4558737-4558779)
chr8 (241-270)||(31315544-31315573)
[»] chr1 (3 HSPs)
chr1 (239-281)||(36070189-36070231)
chr1 (240-281)||(15581055-15581096)
chr1 (241-281)||(17420142-17420182)
[»] chr7 (2 HSPs)
chr7 (241-289)||(3501057-3501105)
chr7 (241-281)||(48157211-48157251)
[»] chr6 (1 HSPs)
chr6 (241-281)||(2514641-2514681)
[»] chr5 (2 HSPs)
chr5 (241-281)||(11054125-11054165)
chr5 (241-281)||(38829726-38829766)
[»] chr3 (2 HSPs)
chr3 (241-281)||(35394792-35394832)
chr3 (241-269)||(48397597-48397625)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 109 - 435
Target Start/End: Complemental strand, 32212941 - 32212616
Alignment:
Q  109 tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaataccatcaatagctcataaaaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32212941 tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaagaccatcaatagctcataaaaa 32212842  T
Q  209 cggtttataacttgacttatattnnnnnnntaactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaa 308  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212841 cggtttataacttgacttatattaaaaaaataactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaa 32212742  T
Q  309 ttggtgcaggaggttcacttcattttttgctcccacatatatcatgtcatataaacataattgtacttggcaccaaaaagaagcaattacagttaatgac 408  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  32212741 ttggtgcaggaggttcacttcattttttgctcctacatatatcatgtcatataaacataattgtactt-gcaccaaaaagaagcagttacagttaatgac 32212643  T
Q  409 tgctatttgaaatcatggaacgagagc 435  Q
    ||| ||||||||||||||||| |||||    
T  32212642 tgcaatttgaaatcatggaactagagc 32212616  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 32213556 - 32213474
Alignment:
Q  10 tggacatcaagccaagagattggtcttgctttattttgttaaattgttgtgaacatagaaactcgattgttcttgtttataat 92  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  32213556 tggacattaagccaagagattggtcttgctttattttgttaaattgtcgtgaacatagaaactcgattgttcttgttaataat 32213474  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 18962127 - 18962169
Alignment:
Q  239 taactttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  18962127 taactttattttatcttttgttataaaaatagctaatacataa 18962169  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 21193977 - 21193934
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataatca 284  Q
    |||||||||||||||||| ||||||||||| | |||||||||||    
T  21193977 actttattttatcttttactataaaaatagcttatacataatca 21193934  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 25228289 - 25228235
Alignment:
Q  18 aagccaagagattggtcttgctttattttgttaaattgttgtgaacatagaaactc 73  Q
    ||||||||| |||||||||| | |||||||||||||||| ||| ||||||||||||    
T  25228289 aagccaagacattggtcttgatctattttgttaaattgtcgtg-acatagaaactc 25228235  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 270
Target Start/End: Complemental strand, 30770864 - 30770833
Alignment:
Q  239 taactttattttatcttttattataaaaatag 270  Q
    ||||||||||||||||||||||||||||||||    
T  30770864 taactttattttatcttttattataaaaatag 30770833  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 8422928 - 8422968
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataa 8422968  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 4558779 - 4558737
Alignment:
Q  239 taactttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  4558779 taactttattttatcttttattatagaaatagcttatacataa 4558737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 31315544 - 31315573
Alignment:
Q  241 actttattttatcttttattataaaaatag 270  Q
    ||||||||||||||||||||||||||||||    
T  31315544 actttattttatcttttattataaaaatag 31315573  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 36070231 - 36070189
Alignment:
Q  239 taactttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||| ||||||||||||  |||||||||    
T  36070231 taactttattttatcttttgttataaaaatagcccatacataa 36070189  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 15581096 - 15581055
Alignment:
Q  240 aactttattttatcttttattataaaaataggtcatacataa 281  Q
    |||||||||||||||||| |||||||||||| |||| |||||    
T  15581096 aactttattttatcttttgttataaaaatagctcatgcataa 15581055  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 17420182 - 17420142
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  17420182 actttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 3501057 - 3501105
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataatcattatg 289  Q
    ||||||||||||||||||||||| || ||| | |||||||| |||||||    
T  3501057 actttattttatcttttattatataattagcttatacataagcattatg 3501105  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 48157211 - 48157251
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  48157211 actttattttatcttttattatagaaataagttatacataa 48157251  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 2514681 - 2514641
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataa 2514641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 11054165 - 11054125
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataa 11054125  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 38829726 - 38829766
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  38829726 acttaattttatcttttattataaaaataggttatatataa 38829766  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 35394792 - 35394832
Alignment:
Q  241 actttattttatcttttattataaaaataggtcatacataa 281  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  35394792 actttattttatcttttattatagaaatagattatacataa 35394832  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 48397625 - 48397597
Alignment:
Q  241 actttattttatcttttattataaaaata 269  Q
    |||||||||||||||||||||||||||||    
T  48397625 actttattttatcttttattataaaaata 48397597  T

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