View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5139_low_1 (Length: 522)
Name: NF5139_low_1
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_low_1 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 52 - 503
Target Start/End: Original strand, 23348413 - 23348868
Alignment:
| Q |
52 |
acacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348413 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
23348512 |
T |
|
| Q |
152 |
gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348513 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcaga |
23348610 |
T |
|
| Q |
247 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaatttt |
346 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
23348611 |
cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaatttt |
23348710 |
T |
|
| Q |
347 |
gtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaat |
446 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348711 |
gtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaat |
23348810 |
T |
|
| Q |
447 |
aatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
23348811 |
aatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
23348868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 56 - 503
Target Start/End: Complemental strand, 12742372 - 12741921
Alignment:
| Q |
56 |
atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742372 |
atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
12742273 |
T |
|
| Q |
156 |
tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12742272 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacaccttgctgatacgatgccgcagacgac |
12742175 |
T |
|
| Q |
251 |
aacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtat |
350 |
Q |
| |
|
|||| || ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| ||||||||| | |
|
|
| T |
12742174 |
aacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcggcggagagagcggcaacggcagagaattttgttt |
12742075 |
T |
|
| Q |
351 |
gaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742074 |
gaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatg |
12741975 |
T |
|
| Q |
451 |
ggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
12741974 |
ggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
12741921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 18354703 - 18355201
Alignment:
| Q |
17 |
catcaatgggcatattggtgtgtttgnnnnnnnntacacat--gattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatt |
114 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18354703 |
catcaatggacatattggtgtgtttgaaaaaaaatacacatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatt |
18354802 |
T |
|
| Q |
115 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtata--- |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
18354803 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatat |
18354902 |
T |
|
| Q |
207 |
-gcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggaga |
305 |
Q |
| |
|
| | ||||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
18354903 |
agtagcatcttcaacacacctgactgatacgacgccgcagacaacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggaga |
18355002 |
T |
|
| Q |
306 |
gagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnn |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
18355003 |
gagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgagatggaagatgaacaactcaaagggcgaagagatttttt |
18355102 |
T |
|
| Q |
406 |
ngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
18355103 |
tgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
18355201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 10328457 - 10328627
Alignment:
| Q |
51 |
tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328457 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
10328556 |
T |
|
| Q |
151 |
tgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||| | |||||| |
|
|
| T |
10328557 |
tgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagcatctt |
10328627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 345 - 503
Target Start/End: Original strand, 10328626 - 10328785
Alignment:
| Q |
345 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
444 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaagga |
10328725 |
T |
|
| Q |
445 |
ataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10328726 |
ataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
10328785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 43070778 - 43071270
Alignment:
| Q |
17 |
catcaatgggcatattggtgtgtttgnnnnnnnntacacat--gattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatt |
114 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
43070778 |
catcaatggacatattggtgtgtttgaaaaaaaatacacatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatt |
43070877 |
T |
|
| Q |
115 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
43070878 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagta |
43070975 |
T |
|
| Q |
210 |
tcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43070976 |
gcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagc |
43071075 |
T |
|
| Q |
310 |
tgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngag |
409 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
43071076 |
tgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgag |
43071175 |
T |
|
| Q |
410 |
aaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
43071176 |
taaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
43071270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 225 - 503
Target Start/End: Complemental strand, 1262601 - 1262321
Alignment:
| Q |
225 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
324 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1262601 |
ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa |
1262502 |
T |
|
| Q |
325 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaa |
424 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
1262501 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttcgagtaaaagcaatatgaa |
1262402 |
T |
|
| Q |
425 |
ttccaacacataaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
1262401 |
ttccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataa |
1262321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 225 - 399
Target Start/End: Original strand, 48849391 - 48849565
Alignment:
| Q |
225 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
48849391 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa |
48849490 |
T |
|
| Q |
325 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
399 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48849491 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaga |
48849565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 411 - 503
Target Start/End: Original strand, 48849601 - 48849695
Alignment:
| Q |
411 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
48849601 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataa |
48849695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 26909806 - 26909873
Alignment:
| Q |
438 |
agaaggaataatgggagaggagagaagagaac--ttaaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||| ||||| |
|
|
| T |
26909806 |
agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataa |
26909873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 52 - 503
Target Start/End: Original strand, 19881544 - 19881999
Alignment:
| Q |
52 |
acacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881544 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
19881643 |
T |
|
| Q |
152 |
gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881644 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcaga |
19881741 |
T |
|
| Q |
247 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaatttt |
346 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
19881742 |
cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaacgacagagaatttt |
19881841 |
T |
|
| Q |
347 |
gtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaat |
446 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881842 |
gtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaat |
19881941 |
T |
|
| Q |
447 |
aatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19881942 |
aatgggagaggagagaagataacttaaaaatgaaggagaaagaggtggacatcgataa |
19881999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 51 - 503
Target Start/End: Original strand, 53972718 - 53973174
Alignment:
| Q |
51 |
tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972718 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
53972817 |
T |
|
| Q |
151 |
tgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
53972818 |
tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacacttggctgatacgatgccgcag |
53972915 |
T |
|
| Q |
246 |
acgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattt |
345 |
Q |
| |
|
||||||||| || | ||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
53972916 |
acgacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattt |
53973015 |
T |
|
| Q |
346 |
tgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaa |
445 |
Q |
| |
|
||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53973016 |
tgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaagcaatctgaattccaacacataaagaatgaa |
53973115 |
T |
|
| Q |
446 |
taatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
53973116 |
taatgggagaggagagaagaaaacttaaaaatgaaggagaaagaggtggacatcgataa |
53973174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 211 - 503
Target Start/End: Complemental strand, 37982878 - 37982585
Alignment:
| Q |
211 |
catcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982878 |
catcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgataggagagagct |
37982779 |
T |
|
| Q |
311 |
gcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngaga |
410 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |
|
|
| T |
37982778 |
gcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcagagggcgaagagatttttttgagt |
37982679 |
T |
|
| Q |
411 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
37982678 |
aaaagcaatctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
37982585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 37983097 - 37982961
Alignment:
| Q |
51 |
tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983097 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
37982998 |
T |
|
| Q |
151 |
tgtaatggaataacaaagttagggaaaagttacagga |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982997 |
tgtaatggaataacaaagttagggaaaagttacagga |
37982961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 225 - 503
Target Start/End: Complemental strand, 31685575 - 31685310
Alignment:
| Q |
225 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
31685575 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcg----------- |
31685487 |
T |
|
| Q |
325 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagcaatctga |
423 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
31685486 |
----gcaacggcatataattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttga |
31685391 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
31685390 |
attccaacacataaagaaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataa |
31685310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
| Q |
247 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaaggg |
292 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
17682246 |
cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg |
17682201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
| Q |
247 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaaggg |
292 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||||||||||||||| |
|
|
| T |
19766488 |
cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg |
19766443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 56 - 503
Target Start/End: Original strand, 7472922 - 7473377
Alignment:
| Q |
56 |
atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472922 |
atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
7473021 |
T |
|
| Q |
156 |
tggaataacaaagttagggaaaagttacagga-----gatttagg--atatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473022 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg |
7473121 |
T |
|
| Q |
249 |
acaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgt |
348 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
7473122 |
acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcgacaacggcagagaattttgt |
7473221 |
T |
|
| Q |
349 |
atgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataa |
448 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7473222 |
ttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaaggaataa |
7473321 |
T |
|
| Q |
449 |
tgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
7473322 |
tgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
7473377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 56 - 503
Target Start/End: Complemental strand, 9044486 - 9044035
Alignment:
| Q |
56 |
atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044486 |
atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
9044387 |
T |
|
| Q |
156 |
tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
9044386 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacacttggctgatacgatgctgcagacgac |
9044289 |
T |
|
| Q |
251 |
aacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtat |
350 |
Q |
| |
|
|||| || ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
9044288 |
aacgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgttt |
9044189 |
T |
|
| Q |
351 |
gaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044188 |
gaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaaatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatg |
9044089 |
T |
|
| Q |
451 |
ggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
9044088 |
ggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
9044035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 56 - 503
Target Start/End: Original strand, 30441983 - 30442435
Alignment:
| Q |
56 |
atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30441983 |
atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
30442082 |
T |
|
| Q |
156 |
tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30442083 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacatatggctgatacgatgccgcagacgac |
30442180 |
T |
|
| Q |
251 |
aacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtat |
350 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||| | |
|
|
| T |
30442181 |
aacggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaacgacagagaattttgttt |
30442280 |
T |
|
| Q |
351 |
gaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga-nnnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataat |
449 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30442281 |
gaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatctgaattccaacacataaagaaggaataat |
30442380 |
T |
|
| Q |
450 |
gggagaggagagaagagaac-ttaaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
30442381 |
gagagtggagagaagagaactttaaaatgaaggagaaagaggtggacatcgataa |
30442435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
| Q |
90 |
ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag |
172 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| |||||| | ||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
40163996 |
ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag |
40163917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 22009359 - 22009392
Alignment:
| Q |
435 |
taaagaaggaataatgggagaggagagaagagaa |
468 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
22009359 |
taaagaaggaataatgggagaggagagaacagaa |
22009392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 51 - 503
Target Start/End: Complemental strand, 1343 - 887
Alignment:
| Q |
51 |
tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
150 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343 |
tacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
1244 |
T |
|
| Q |
151 |
tgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1243 |
tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcag |
1146 |
T |
|
| Q |
246 |
acgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattt |
345 |
Q |
| |
|
|||||||||||| | ||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
1145 |
acgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattt |
1046 |
T |
|
| Q |
346 |
tgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaa |
445 |
Q |
| |
|
||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1045 |
tgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaagcaatttgaattccaacacataaagaaggaa |
946 |
T |
|
| Q |
446 |
taatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
945 |
taatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 224 - 497
Target Start/End: Original strand, 14677630 - 14677904
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14677630 |
cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga |
14677729 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
14677730 |
gagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
14677829 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacat |
497 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14677830 |
atttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacat |
14677904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 224 - 503
Target Start/End: Original strand, 31100480 - 31100760
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
31100480 |
cctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggaga |
31100579 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
||| ||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
31100580 |
gagtggcgacggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctga |
31100679 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
31100680 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataa |
31100760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 225 - 503
Target Start/End: Complemental strand, 5658268 - 5658004
Alignment:
| Q |
225 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
324 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
5658268 |
ctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgacgg---- |
5658173 |
T |
|
| Q |
325 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaa |
424 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
5658172 |
-----------caaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaa |
5658084 |
T |
|
| Q |
425 |
ttccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
5658083 |
ttccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataa |
5658004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 302 - 493
Target Start/End: Original strand, 33688984 - 33689177
Alignment:
| Q |
302 |
gagagagctgcgacgacggagagagcggcaacgacagcgaatt-ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagan |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | || ||| | |||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
33688984 |
gagagagctgcggcgacggagagagcggcgatgggagagaagtcttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-gaagagat |
33689082 |
T |
|
| Q |
401 |
nnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtgg |
493 |
Q |
| |
|
||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
33689083 |
ttttttgagtaaaagcaatctgaattccaaaaagtaaagaaggaataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgg |
33689177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 224 - 503
Target Start/End: Original strand, 29862969 - 29863249
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||| | |||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
29862969 |
cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga |
29863068 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
29863069 |
gagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
29863168 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaact-taaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
29863169 |
attctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaaggagaaagaggtggacatcgataa |
29863249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 224 - 493
Target Start/End: Original strand, 11242 - 11512
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
11242 |
cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga |
11341 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||| |
|
|
| T |
11342 |
gagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaactcaaagggggaagggatttgtttgagtaaaagcaatctga |
11441 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtgg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11442 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgg |
11512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 224 - 503
Target Start/End: Complemental strand, 35574 - 35296
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| || |||||||| |||||||||||||| ||||||||| |
|
|
| T |
35574 |
cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga |
35475 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
|||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || || ||| ||||||||||||| |
|
|
| T |
35474 |
gagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaaacgatttttttgagtaaaagcaatctga |
35375 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
35374 |
attccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaaggtggacatcgataa |
35296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 224 - 503
Target Start/End: Original strand, 33045054 - 33045319
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33045054 |
cctggatgatacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacg---- |
33045149 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
33045150 |
-----------acaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctga |
33045238 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33045239 |
attccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataa |
33045319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 224 - 503
Target Start/End: Complemental strand, 10092985 - 10092731
Alignment:
| Q |
224 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
10092985 |
cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcg-------------------acgacagaga |
10092905 |
T |
|
| Q |
324 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
423 |
Q |
| |
|
||||||| ||| || ||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||| ||| |
|
|
| T |
10092904 |
gagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaagg--gaagagatttttttgagtaaaagcaatttga |
10092807 |
T |
|
| Q |
424 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10092806 |
attccaacacataaagaaggaataatgggagagg-----agagaacttaaaaatgaaggagaaagaggtggacatcgataa |
10092731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 22000988 - 22001096
Alignment:
| Q |
291 |
ggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagg |
390 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
22000988 |
ggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagg |
22001087 |
T |
|
| Q |
391 |
gcgaagaga |
399 |
Q |
| |
|
| ||||||| |
|
|
| T |
22001088 |
gggaagaga |
22001096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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