View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5139_low_3 (Length: 356)
Name: NF5139_low_3
Description: NF5139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5139_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 54601706 - 54601369
Alignment:
| Q |
1 |
acttgtattggcatgtattgctgaatataattgaatgaagttacacacaaaacatatatactatgttttgaccatgatttactatatatgtttgcaaaat |
100 |
Q |
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| T |
54601706 |
acttgtattggcatgtattgctgaatataattgaatgaagttacacacaaaacatatatactatgttttgaccatgatctactatatatgtttgcaaaat |
54601607 |
T |
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| Q |
101 |
ggcaatacaaaaatcctgtg-ggattaaataaatgaacaagtatatatagcagaccaaagtaatccgtctcttctttaaacttctatttgttccttctaa |
199 |
Q |
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| T |
54601606 |
ggctatacaaaaatcctgtgtggattaaataaatgaacaagtatatatagcagaccaaagtaatccgtctcttctttaaacttctatttgttccttctaa |
54601507 |
T |
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| Q |
200 |
taacgttcgaaaatagtaaataaaatcgttagagactgatgacattctttaatcaattaactaatattgctattagatcactgcctccctccctccccaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54601506 |
taacgttcgaaaatagtaaataaaatcgttagagactgatgacattctttaatcaattgactaatattgctattagatcactgcctccctccctccccaa |
54601407 |
T |
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| Q |
300 |
caaacacacatgttatgtttcatttgccatacaatata |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
54601406 |
caaacacacatgttatgtttcatttgccatacaatata |
54601369 |
T |
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