View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5140-Insertion-1 (Length: 112)
Name: NF5140-Insertion-1
Description: NF5140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5140-Insertion-1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 46132079 - 46131975
Alignment:
| Q |
8 |
ttaatcttatccaatcctgcacactctttaatcttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagcatat |
107 |
Q |
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| T |
46132079 |
ttaatcttatccaatcctgcacactctttaatcttatccttgttaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagcatat |
46131980 |
T |
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| Q |
108 |
ccgcg |
112 |
Q |
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| T |
46131979 |
ccgcg |
46131975 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 46126416 - 46126350
Alignment:
| Q |
40 |
cttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagcata |
106 |
Q |
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| T |
46126416 |
cttatccttgttaatttctcctgcctttaaaatgtttttcagcccagtcagacaaagtgtcagcata |
46126350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 46705145 - 46705110
Alignment:
| Q |
40 |
cttatccttgtaaatttctcctgcctttaaaatgtt |
75 |
Q |
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| T |
46705145 |
cttatccttgttaatttctcctgcctttaaaatgtt |
46705110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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