View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5140_high_2 (Length: 346)
Name: NF5140_high_2
Description: NF5140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5140_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 14221839 - 14221503
Alignment:
| Q |
1 |
tggtgccttctgcaggaacaacaggaacccattcttcattgctaaggacttccaaacctcctacttcatcttgaagaactaaggtaacacagttgacatc |
100 |
Q |
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| T |
14221839 |
tggtgccttctgcaggaacaacaggaacccattcttcattgctaaggacttccaaacctcctacttcatcttgaagaactaaggtaacacagttgacatc |
14221740 |
T |
|
| Q |
101 |
ttgatgctccctgagtccgacattttcgttgtttgaagctggaatgtaacgaaatgccaccatgatatcccagcttctgtcattgttgaattctttgagg |
200 |
Q |
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| T |
14221739 |
ttgatgctccctgagtccgacattttcgttgtttgaagctggaatgtaacgaaatgccaccatgatatcccagcttctgtcattgttgaattctttgagg |
14221640 |
T |
|
| Q |
201 |
aaattgggagggaggcctaaacactcatttataatgttctctattaccactccaatcttgctcgtttgtgcaaatagttcttcaactacttccctatcac |
300 |
Q |
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| T |
14221639 |
aaattgggagggaggcctaaacactcatttataatgttctctatcaccactccaatcttgctcgtttgtgcaaatagttcttcaactacttccctatcac |
14221540 |
T |
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| Q |
301 |
ataataggcacacattttatgtgcacttgagtattat |
337 |
Q |
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| T |
14221539 |
ataataggcacacattttatgtgcacttgagtattat |
14221503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 14211713 - 14211379
Alignment:
| Q |
3 |
gtgccttctgcaggaacaacaggaacccattcttcattgctaaggacttccaaacctcctacttcatcttgaagaactaaggtaacacagttgacatctt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
14211713 |
gtgccttctgcaggaacaacaggaacccattcttcattactaaggacttccaaacctcctacttcatcttgaagaacaaaggtaacacagttgccatctt |
14211614 |
T |
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| Q |
103 |
gatgctccctgagtccgacattttcgttgtttgaagctggaatgtaacgaaatgccaccatgatatcccagcttctgtcattgttgaattctttgaggaa |
202 |
Q |
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|||||| ||| |||||||||||||||||| |||||||| | |||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14211613 |
catgctctgtgattccgacattttcgttgttagaagctggtaagtaacgcaaggccaccatgaaatcccagcttctgtcattgttgaattctttgaggaa |
14211514 |
T |
|
| Q |
203 |
attgggagggaggcctaaacactcatttataatgttctctattaccactccaatcttgctcgtttgtgcaaatagttcttcaactacttccctatcacat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
14211513 |
attgggagggaggcctaaacactcatttataatgttctctatcacaactccaatcttgctcatttgtgcaaaaagttcttcaactacttccctatcacat |
14211414 |
T |
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| Q |
303 |
aataggcacacattttatgtgcacttgagtattat |
337 |
Q |
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| T |
14211413 |
aataggcacacattttatgtgcacttgagtattat |
14211379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 14204125 - 14204078
Alignment:
| Q |
290 |
ttccctatcacataataggcacacattttatgtgcacttgagtattat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14204125 |
ttccctatcacataataggcacacattttatgtgcacttgagtattat |
14204078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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