View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5140_low_1 (Length: 426)
Name: NF5140_low_1
Description: NF5140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5140_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 146 - 416
Target Start/End: Original strand, 31853006 - 31853276
Alignment:
| Q |
146 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
245 |
Q |
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| T |
31853006 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
31853105 |
T |
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| Q |
246 |
tcaaaccataattctcaaagtttctgagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaa |
345 |
Q |
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| T |
31853106 |
tcaaaccataattctcaaagtttctaagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaa |
31853205 |
T |
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| Q |
346 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgttcat |
416 |
Q |
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| T |
31853206 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgttcat |
31853276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31852876 - 31852941
Alignment:
| Q |
16 |
aaatctctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaagg |
81 |
Q |
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| T |
31852876 |
aaatctctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaagg |
31852941 |
T |
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