View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5140_low_4 (Length: 238)
Name: NF5140_low_4
Description: NF5140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5140_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14221831 - 14222053
Alignment:
| Q |
1 |
aaggcaccatagtggttaatgttggtgatgttattcaggtaatcctatgnnnnnnnnnngttaaatcnnnnnnngaggcaatgtttgtgttaattttgtc |
100 |
Q |
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| T |
14221831 |
aaggcaccatagtggttaatgttggtgatgttattcaggtaatcctatgttttttttttgttaaatatttttttgaggcaatgtttgtgttaattttgtc |
14221930 |
T |
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| Q |
101 |
ttatcaaaagggaaaagcttctttgaaataaatttgtttctaaagtgagcaagtgatggtttatttatataaagtaattaactttagaggatttgaactt |
200 |
Q |
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| T |
14221931 |
ttatcaaaatggaaaagcttctttgaaataaatttgtttctaaagtgagcaagtgatggtttatttatataaagtaattaactttagaggatttgaactt |
14222030 |
T |
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| Q |
201 |
ttaattgaaaaatcattagattt |
223 |
Q |
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| T |
14222031 |
ttaattgaaaaatcaatagattt |
14222053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 14211798 - 14211934
Alignment:
| Q |
75 |
gaggcaatgtttgtgttaattttgtcttatcaaaagggaaaagcttctttgaaataaatttgtttctaaagtgagcaagtgatggtttatttatataaag |
174 |
Q |
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| T |
14211798 |
gaggcaatgtttgtgttaatcttgttttatcaaaagggaaaagcttctttgaaacaaatttgactctaaagtgagcaagtgatggtttatttatacaaag |
14211897 |
T |
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| Q |
175 |
taattaactttagaggatttgaacttttaattgaaaa |
211 |
Q |
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| T |
14211898 |
taattaactttagaggatttgaacttttgattgaaaa |
14211934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14211707 - 14211748
Alignment:
| Q |
1 |
aaggcaccatagtggttaatgttggtgatgttattcaggtaa |
42 |
Q |
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| T |
14211707 |
aaggcactatagtggttaatgttggtgatgttattcaggtaa |
14211748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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