View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141-Insertion-10 (Length: 80)
Name: NF5141-Insertion-10
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-34
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 40880007 - 40879935
Alignment:
| Q |
8 |
aacataaaacaaagttgtaatcaggattttgttccagtatcaaaagacaaacacatgagatccatctttaacc |
80 |
Q |
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| T |
40880007 |
aacataaaacaaagttgtaatcaggattttgttccagtatcaaaagacaaacacatgagatccatctttaacc |
40879935 |
T |
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Target: chr4 (Bit Score: 59; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 51964487 - 51964557
Alignment:
| Q |
8 |
aacataaaacaaagttgtaatcaggattttgttccagtatcaaaagacaaacacatgagatccatctttaa |
78 |
Q |
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| T |
51964487 |
aacataaaacaaagttgtaattaggattttgttccagtttcaaaagacaaatacatgagatccatctttaa |
51964557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 27314508 - 27314438
Alignment:
| Q |
8 |
aacataaaacaaagttgtaatcaggattttgttccagtatcaaaagacaaacacatgagatccatctttaa |
78 |
Q |
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||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27314508 |
aacataaaataaagttgtaatttggattttgttccagtttcaaaagacaaacacatgagatccatctttaa |
27314438 |
T |
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