View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141-Insertion-2 (Length: 690)
Name: NF5141-Insertion-2
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 47458506 - 47458144
Alignment:
| Q |
8 |
gaaccctacctgacgaattattgatattgctaccggaaccagaactagtttgttgtttttctctgagagaagttgacaaggttggagttggatttttagg |
107 |
Q |
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| T |
47458506 |
gaaccctacctgacgaattattgatattgctaccggaaccagaactagtttgttgtttttctctgagagaagttgacaaggttggagttggatttttagg |
47458407 |
T |
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| Q |
108 |
gacaaatttcttctgtactttgttgaaacccttattgttgttgtaattgtcttgcctaccttgaacgaaacgattcgacattttcgtaatcagaatcgtt |
207 |
Q |
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| T |
47458406 |
gacaaatttcttctgtactttgttgaaacccttattgttgttgtaattgtc---------------gaaacgattcgacattttcgtaatcagaatcgtt |
47458322 |
T |
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| Q |
208 |
aatggaagctgaacaccgatcagaactatgaacacagtttttgggatgggttggttcaccgtatacaaatgcttctgcttctaaagtcacttgggttatg |
307 |
Q |
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| T |
47458321 |
aatggaagctgaacaccgatcagaactatgaacacagtttttgggatgggtt----caccgtatacaaatgcttctgcttctaaagtcacttaggttatg |
47458226 |
T |
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| Q |
308 |
ctaccaggttttacctttaccgttttcccgaatcacaaaatcttttgttttttcgtaacaacatgtaaaaatcaaattcatc |
389 |
Q |
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| T |
47458225 |
ctaccaggttttacctttaccgttttcccgaatcacaaaatcttttgttttttcgtaacaacatgtaaaaatcaaattcatc |
47458144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 462 - 570
Target Start/End: Complemental strand, 47458031 - 47457915
Alignment:
| Q |
462 |
tgtttatttggatcgatcgaacaaaatgga----------ttttgattgaatataatagagtcaaacgaaataaaaatatccaattaagtgtttgataat |
551 |
Q |
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| T |
47458031 |
tgtttatttggatcgatcgaacaaaatggagcgaaattgattttgattgaatataatag--tcaaacgaaataaaaatatccaattaagtgtttgataat |
47457934 |
T |
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| Q |
552 |
tgtttaagtttgattagag |
570 |
Q |
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| T |
47457933 |
tgtttaagtttgattagag |
47457915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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