View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141-Insertion-3 (Length: 557)
Name: NF5141-Insertion-3
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 32 - 376
Target Start/End: Complemental strand, 5051198 - 5050854
Alignment:
| Q |
32 |
aattaataacaatttattctactttttgttgatgttgatgtttaaaacgttcggtcttatttttcataatggtcgatgtttttcataattgctaggaaat |
131 |
Q |
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| T |
5051198 |
aattaataacaatttattctactttttgttgatgttgatgtttaaaaggttcggtcttatttttcataatggtcgatgtttttcataattgctaggaaat |
5051099 |
T |
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| Q |
132 |
taaagaagcagccaattgttgttcgttcctcttcaaagaatatcatgcttgggcatttcttacgatgaagcaactcctctgctgttatggccttccatga |
231 |
Q |
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| T |
5051098 |
taaagaagcagcctattgttgttcgttcctcttcaaagaatatcatgcttgggcatttcttacgatgaagcaaatcctctgctgttatggccttccatgg |
5050999 |
T |
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| Q |
232 |
gagtcaatcaactattcaattagctagtaatcctttgtaccacccaattttatttgtgagtatgtgccgtttggttgcctcaagtcaattcatgtaactt |
331 |
Q |
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| T |
5050998 |
gagtcaatcaactattcaattagctagtaatcctttgtaccacccaattttatttgtgagtatgtgccgtttggttgcctcaagtcaattcatgtaactt |
5050899 |
T |
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| Q |
332 |
ttgtcaagcaaaccaaacattgtcatgggtttcatttcattagaa |
376 |
Q |
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| T |
5050898 |
ttgtcaagcaaaccaaacattgtcatgggtttcatttcattagaa |
5050854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 453 - 557
Target Start/End: Complemental strand, 5050742 - 5050638
Alignment:
| Q |
453 |
ttggcaaggaaatttggaccaaatttaaagaatgccattaccatgctctggggaatgtgatgaaaaggagaatcttccttttccggtttggggttgtcta |
552 |
Q |
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| T |
5050742 |
ttggcaaggaaatttggaccaaatttaaagaatgccattaccatgctctggggaatgtgatgaaaaggagaatcttccttttccggtttggggttgtcta |
5050643 |
T |
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| Q |
553 |
catgt |
557 |
Q |
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| T |
5050642 |
catgt |
5050638 |
T |
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