View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141-Insertion-7 (Length: 90)
Name: NF5141-Insertion-7
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 61; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-27
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 20102863 - 20102943
Alignment:
| Q |
7 |
agaaatccctctgaagtgcaatggactggactactctcggtttgtagtaggaaccaatataatttccatgttctctctctc |
87 |
Q |
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| T |
20102863 |
agaaatccctctgaagtgcaatggacaggactatttttggtttgtagtaggaaccaatataatttccatgtgctctctctc |
20102943 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 24110036 - 24110101
Alignment:
| Q |
8 |
gaaatccctctgaagtgcaatgg-actggactactctcggtttgtagtaggaaccaatataatttc |
72 |
Q |
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| T |
24110036 |
gaaatccctaggaagtgcaaggggactggactactcttggtttgtgggaggaaccaatataatttc |
24110101 |
T |
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Target: chr7 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 21019427 - 21019388
Alignment:
| Q |
31 |
actggactactctcggtttgtagtaggaaccaatataatt |
70 |
Q |
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| T |
21019427 |
actgaactactctcggtttgtggaaggaaccaatataatt |
21019388 |
T |
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