View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141-Insertion-9 (Length: 253)
Name: NF5141-Insertion-9
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141-Insertion-9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 327934 - 328179
Alignment:
| Q |
8 |
gtatcaacctagtcctccacattgtcaatatttcaaaatgatatctagagttgccaaataaaataaaccatcgttcttctgttaagatctattatcagtt |
107 |
Q |
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| T |
327934 |
gtatcaacctagtcctccacattgtcaatatttcaaaatgatatctggagttgccaaataaaataaaccatcgttcttctgttaagatttattatcagtt |
328033 |
T |
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| Q |
108 |
gcatccgacattatttactccgtttcgaattcatcacctaacctattacatacggaagacacgtatgaatatcaaagtaactaacgaaagacacctgtaa |
207 |
Q |
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| T |
328034 |
gcatccgacattatttactcaatttcgaattcatcacctaacctactacatacggaagacacgtatgaatatcaaagtaactaacgaaagacacatgtaa |
328133 |
T |
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| Q |
208 |
gggccaaactgactaatataatactcaacccagtatgtggcaaagg |
253 |
Q |
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| T |
328134 |
gggccaaactgactaatataatactcaaccaagtatgtggcaaagg |
328179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 620339 - 620180
Alignment:
| Q |
83 |
cttctgttaagatctattatcagttgcatccgacattatttactccgtttcgaattcatcacctaacctattacatacggaagacacgtatgaatatcaa |
182 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
620339 |
cttctgttaagatctattatcaattgcatccgacattattcactcagtttcgaatccatcacctcaccta---catacggaagacacgtatgagtatcaa |
620243 |
T |
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| Q |
183 |
agtaactaacgaaagacacctgtaagggccaaactgactaatataatactcaacccagtatgt |
245 |
Q |
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| T |
620242 |
agtaactaacgaaagacacatgtaagggccaaactgactaatataatactcaaccaagtatgt |
620180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 620661 - 620588
Alignment:
| Q |
9 |
tatcaacctagtcctccacattgtcaatatttcaaaatgatatctagagttgccaaataaaataaaccatcgtt |
82 |
Q |
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| T |
620661 |
tatcaacctagtcctccacattgtcaatatttcaaaatgatatctggagttgccaaataaagtaaaccatcgtt |
620588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27969877 - 27969918
Alignment:
| Q |
9 |
tatcaacctagtcctccacattgtcaatattt-caaaatgat |
49 |
Q |
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| T |
27969877 |
tatcaacctagtcctccacattgtcaatatttacaaaatgat |
27969918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 33920739 - 33920703
Alignment:
| Q |
8 |
gtatcaacctagtcctccacattgtcaatatttcaaa |
44 |
Q |
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| T |
33920739 |
gtatcaacctagtccttcacattatcaatatttcaaa |
33920703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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